AMCG00001790 (rasgrp3,LOC106576952,LOC106606711)


Basic Information

Item Value
gene id AMCG00001790
gene name rasgrp3,LOC106576952,LOC106606711
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 15837024 ~ 15850756 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001790
ATGGGATCATCAACTCTGGGGAAAGCAGCCACACTGGACAAGCTGTTGGAGGCCTGCATAGGGGCATTCGACGACAACGGGGAGTTGGAAAGTAATCATTTACCACGTGTCATGCTGTTAATGCATCGCTGGTATGTCACTTCCACTGAACTGGCTGGGAAACTGCTGTTGATATATCCTTCAAAGTACTGGATAGTGGAGTTCCCCGCAGAGTTTAACCTTGACCTGGGCCTGATCCGGCTGACCGAGGAGTTCCGGGATGTGGCCGCCCAGCTGGGCTGTGACGAGCACTTCAAACTCATCGACATCTCCACCATCCCGTCATATGACTGGATGCGGAGGGTGACTCAGAGGAAAAAGCAGTCCAAGAAAGGAAAGGCATCACTTCTCTTCGACCACTTGGAGCCCATGGAGCTGGCTGAGCACCTCACCTTCCTGGAGTACAAGTCTTTCAGGAGGATTTCGTTCACTGACTACCAGAGCTATGTGACCCATGGCTGCCTGGTGGACAACCCCACCCTGGAGCGCTCCATCGCACTCTTCAACGGCGTGTCCCAATGGGTGCAGCTGATGGTGCTGAGCAAGCTGACGGCCCAGCACCGTGCCGAGGTCATCACCAAGTTCATCAATGTGGCGCAGAACCTCCTGCACCTGCAGAACTTCAACACCCTGATGGCCGTGGTGGGCGGACTGAGCCACAGCTCCATCTCCCGGCTGAAGGAGACGCACTCACACCTCTCGCCCGAGGTCACAAAGATTTGGGATGAGATGACAGAGCTGGTCTCCTCCAATGGCAACTACTGTAACTACCGGAAAGCGTTTGCCGAATGTGACGGCTTCAAGATCCCCATTCTGGGGGTTCACTTGAAGGACTTGATAGCTGTGCACGTGGTCTTCCCCGACTGGGTGGACGAGAACAAAGTGAACATTGTGAAAATGCAGCAGCTCTACGGCACCTTCAGCGAGCTGGTGTCGCTACAGAGCGCCACGGCACAAGTTGAACCCAACATGGACCTAATCTACCTGCTGACACTTTCTCTAGATCTCTATTACACTGAAGACGAGATTTACGAGCTCTCCTTGCTCCGTGAGCCCCGCAACCCCAAATCCCTGCCGACCTCTCCCACCACGCCAAACAAGCCTGTGGCCCCACTGGACTGGGCATCAGGGGTGACCACCAAGCCTGACCCTACTGTTATCAACAAGCACATCAGGAAAGTCGTGGATTCTGTATTTAGGAACTATGACCATGACCACGATGGCTATATCTCTCAAGAGGATTTCGAAAGCATTGCTGCCAATTTCCCCTTCCTGGACTCCTTCTGTGTGCTGGACAAGGATCAGGACGGTCTGATCAGCAAAGATGAGATGATCGCCTACTTCTTGAGGGCCAACTCTCTGCTGCAGTATAAGATGGGTCCCGGCTTCGTTCACAACTTCCAGGAGATGACGTATCTCAAACCCACCTTCTGTGAGCACTGCGCCGGATTTcTCTGGGGTATAATCAAGCAAGGATATAAATGCAAAGaCTGCGGGGTGAACTGCCACAAGCAGTGCAAGGAGCTGCTGGTGTTGGCGTGCAGGAAGTTGCCCCGGGCCCCCTCCCTTGGCAGCGTGTCCACCGGCTCCTGCAGCCACAGCTCCCTGCCCAGTAGCCCAGCGCTGCCGTGTGCGGCCCAGGACGAGGTGTTTGAGTTCCCCCGCGTGATGCCCAGCAGCCAGAACCTGGAGGGCCAGTCCATCACGCTGATGACCGGCACGGCCCGGAAGATCTCCGTGCGCCTCCAGCGAGCCACCACCAGCCAGGCCACCCAGACCGAGCCGCTGTGGCACGAGCACAGCTGGGGGGCAGGCGACGGGGGCTCCCACACCTTCCCCAAGATGAGATACAAGCTGCACAGCAAGAGCTCCAAGAGCAAGGGTTTCGCCCGCTGGGAGAACGACAAGCCGGGGCCACAGGCCAGAGTCGACTCCCAGGAGCAGACGGATGACGGTGGCCGAGGGCTGGAGCACAACGGCCTGGGAGCTGATGAGGAAAAGCAGGACTCCTCCGAGGACAGCTGACTTTCGGCCGGCGCGGTCAGAACGAGGAGCCTGCGGGGGTCAAACCACCACAAATCCAGGAAGCTCACTGGACTGGGAGATGTGTTGGGCTGTTTGAAACCCTTGTTTGGTGAACTGGAGTAGTGTTGTTGGCCGCGGGTGACATTGCCAGGAAACGGGCCCAGAGTGACTCCATACTGCAGGGGGAAATGTGCGTGTTATTAAATACGGACGTGAGGGGAAGGTGGCACTCAGACTGAAATCCACTATGGTAATATAGTGAATGTAAGGCAGGACCTTTTCAAGCAGGACTGGACTGCTGGTCCCGTGAATAAGAGCTTCATCGCTGCACGTGAAGACAGCGGTCAGTCCGACACCCTCTGTGAATTTCCAGGAAGACGAGTCTGGATCTGCCCCTTCCAAAATACATCTGCCCCCCTGATCTCTCACTGTTCACTGAAAACCCATGTTTGGACACAGAAGATAAGTGCATCTGgcttattgatttaatttaaaacaatttaaagactgcaaaaatatatgaatgaagGTGTTAATACCAATAGTGTTTGGCATCATGTGTGAATCACAATGGGAGACCTGGCCAGAAGGGGTTTCtcggaaaataaaatgtaatatcttCAGCAGTaggttaaaaaagaaatatatatatatatatatagttttcaaACGATGGAAGATGCAGAACGTCAAACAGGTCAGAGTGTTATAGCATGTATGAAGGAGGACCAAACGTACGTGACCGAACGAGGAAGGAAACAGTTCTAGATTTAAAGATGGCTGAACAGAACGTCTTTTATGAAAGATAATGTGTTGAATAGACCTGCCGGACAGCCTGAAAAAGTGAGAGAAGCCTGAGTGGTAGTTCAAAGTCTTGCAATCGATTGAGTCCGGATGACACAAGGTACTTGCATTGACCTGTGAAAGATgacaatgtgttttatttctcacCCCAAACCCAATCTAGCAAACATCACCTAACCATAGAATTTGAATAGTCAATCCAATTAAATTCTCTTCTGTTTTCCGCTGCAGTCTCCCGAATCTAACAGACACCAGGGGCTTTTCCGACAGCCCACACAATCAAAGGTATCAGTTCTCCCAGCACCACAAGGCCAGGTACACAAACTGCTGCTGTTGTTCTGTGCAAGGCCAAAAACTAAACACTTCTGTCCTTCACAATGTACAGCAGGATTAGTATGAAATTGAAAGTAATTTATAGATGCAGCAAGACAGGCAGAGAGTTCAGTAACATGGATCACAGTAAAAACTGGAAAGGTGGTTTGTGTGAGCAGGAGCAGATGGTTTTGATGAGGAGGATTTATGTTAAAACCGAATTTGCTGTGCTCAGGGTGATTCTGCAGGGAGGGATACTGATCAGATATGGCTATGGATCAGAACTagtgagagaaaaatatatataaatatatacacacattactTAATGTATAGTTTTGTAACTGAGACACATCAGGAGACAGTATTAGCTGACATGGTTTCTGTTTCAGCGTGTTTCTGTGATGGCGGTTTGTTTTGAGAGCTGTTAGTTCCTGCAAAGCCTCCACTGAATACACAGAGGATAAATACTCTcaatatcaaatactttttctaaTAAGGAAACAACACCCTGGCCTTCTGAATAACAAAGGGATATaacatgaagaagaaaatacagacaCTTCATTCACAGCCTTTCTGTTGGTCTACAGAAACATGCAGGAACTGTAGTGTTCGGTTatgtaattgaatttgaatttatcCTGGTTAGTTTTGGACACATTCCAGCAAGtcttaatgttgttgttgttgtggttattattattattattattattattattattattattattattattattattattagctggTCTACTTGAAAAGCAATTTGgcatttttatatgtttgattgtattttgttcttcatttatgctgtttaaaaaatgtatatgaagaGCCTTTagtagcatttttattttattatgaaagaaaaatgtcatttgtagttttttttttttaagcattgaATTCAGG

Function

symbol description
rasgrp3 Predicted to enable calcium ion binding activity and guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within Ras protein signal transduction and regulation of GTPase activity. Is expressed in blood island; central nervous system; and trunk vasculature. Human ortholog(s) of this gene implicated in hypertension. Orthologous to human RASGRP3 (RAS guanyl releasing protein 3).

NR:

description
PREDICTED: ras guanyl-releasing protein 3-like isoform X1

GO: NA

KEGG:

id description
K12362 RASGRP3; RAS guanyl-releasing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001790 True 4101 mRNA 0.48 15 15837024 15850756

Neighbor

gene id symbol gene type direction distance location
AMCG00001788 NA coding downstream 9249 15818283 ~ 15827775 (-)
AMCG00001789 degs1,LOC106606739 coding downstream 19340 15798760 ~ 15817684 (-)
AMCG00001792 yipf3,LOC107696384 coding downstream 52869 15781218 ~ 15784155 (-)
AMCG00001783 lrrc73 coding downstream 57736 15773330 ~ 15779288 (-)
AMCG00001778 NA coding downstream 159586 15655371 ~ 15677438 (-)
AMCG00001793 NA coding upstream 31 15850787 ~ 15865923 (-)
AMCG00001794 ltbp1 coding upstream 28872 15879628 ~ 15936565 (-)
AMCG00001795 NA coding upstream 116347 15967103 ~ 15991258 (-)
AMCG00001796 NA coding upstream 168157 16018913 ~ 16025403 (-)
AMCG00001798 birc6 coding upstream 179838 16030594 ~ 16045657 (-)
G160387 fbxo28,LOC106576958 non-coding downstream 40666 15791996 ~ 15796358 (-)
G160319 NA non-coding downstream 226308 15603843 ~ 15610716 (-)
G160311 NA non-coding downstream 241669 15594607 ~ 15595355 (-)
G160132 NA non-coding downstream 1273519 14559152 ~ 14563505 (-)
G160094 NA non-coding downstream 1343375 14491898 ~ 14493649 (-)
G160538 NA non-coding upstream 383659 16234415 ~ 16235803 (-)
G160548 ryr2,LOC107395022,LOC102799451 non-coding upstream 464571 16315327 ~ 16315563 (-)
G160631 NA non-coding upstream 966183 16816939 ~ 16817195 (-)
G160640 NA non-coding upstream 1003897 16854653 ~ 16854957 (-)
G160682 NA non-coding upstream 1124692 16975448 ~ 16975879 (-)
AMCG00001791 fam98a other downstream 3218 15828758 ~ 15833806 (-)
AMCG00001784 NA other downstream 134524 15691569 ~ 15702500 (-)
G160255 NA other downstream 316385 15504311 ~ 15520639 (-)
AMCG00001771 banf1,LOC105900308,LOC107086546,LOC106536379,LOC106576720 other downstream 335231 15499553 ~ 15501793 (-)
AMCG00001756 NA other downstream 1266097 14550689 ~ 14570927 (-)
AMCG00001843 NA other upstream 1240597 17091353 ~ 17092549 (-)
G160817 NA other upstream 1680110 17530866 ~ 17531990 (-)
AMCG00001865 NA other upstream 1957262 17808018 ~ 17810097 (-)
AMCG00001863 LOC105006094,LOC104951035,LOC101160874,LOC106578938 other upstream 2009383 17860139 ~ 17865379 (-)
G160925 mta3,LOC105904126,LOC106516625,LOC107749351 other upstream 2057998 17908754 ~ 17910853 (-)

Expression


Co-expression Network