AMCG00001792 (yipf3,LOC107696384)


Basic Information

Item Value
gene id AMCG00001792
gene name yipf3,LOC107696384
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 15781218 ~ 15784155 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001792
ATGTCAACACCAGAAGCCAACAAGAGCACGACCACGACCGCGGAGTCCTGGGGGGGCTTCGATGACAACATGATCCAGGGCGGGGGCTCGGCCGTGATCGACATGGAGAACATGGACGACACGTCGGGCTCCAGCTTCGAGGACATGGGCGAGATGCACCAGTGcatgaaggaggaggaggaggtgaccGAGGAGGCCGCCGTCACAGAGGAGGGCGGCGAGGACGGGGAGTTCCTGGGCATGAAGGGCTTCAGGGGGCAGCTGGGCCGGCAGGTGGCCGACGAGGTGAGTCAGAGCGGGGCACGAGACTCCCATCGGCCGGCCAGGCCAGGTTCTCgtGTGTGGCAAGCAGGGAAGAGACAGGCATCGAAGGCTTTCAATCTGTATGCCAACATTGACATCCTCAGACCCTACTTTGATGTGGAGCCGGTTCAAGTCCGAAACAGgcTGCTAGAGTCCATGATTCCTGTCCGTATGATTAACTTTCCACAGAAAATTGCTGGAGAACTCTATGGTCCCCTAATGCTAGTGTTCACCTTGGTTGCCATCCTGCTCCATGGAATGAAGACCTCCGGGACCGTGATTAGAGAGGGCACCCTGATGGGCACAGCCATCGGCACCTGCTTCGGATACTGGCTCGGCGTCTCCTCCTTCATCTATTTCCTCGCCTACCTGTGCAACGCTCAGATCACCATGCTGCAGATGCTGTCACTGCTGGGTTACGGTCTGTTCGGGCACTGCCTCGTCCTCTTCATCACCTACAACGTCCATTTCCACTCCCTCTTCTACATCCTGTGGCTGGTTATCGGGGGGCTCTCGACGCTGAGGATGGTCTCAGCCCTGATCTCTCGCACCGTGGGCCAGACCCCTCGGCTCCTGTTGTGCGGGACCGTCGCCGCTCTGCACATGCTGTTCCTGCTCTACCTCCACTTTGCCTACCACAAGATCGTCGAAGGTATCCTGGACACCCTGGAAGGACCCAACGTGCCGCCCATTCAGAGGGTCGCCCGAGATCTGCCCGCTGTGTCGGCCACCCTGGTGAACGCCACCATCCGGAGCATCGGCGTTGCCCTGAAGTCTCAGTAA

Function

symbol description
yipf3 Predicted to act upstream of or within cell differentiation. Predicted to be located in cytoplasm and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human YIPF3 (Yip1 domain family member 3).

NR:

description
PREDICTED: protein YIPF3

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K22941 YIPF3, KLIP1; protein YIPF3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001792 True 1086 mRNA 0.59 9 15781218 15784155

Neighbor

gene id symbol gene type direction distance location
AMCG00001783 lrrc73 coding downstream 1930 15773330 ~ 15779288 (-)
AMCG00001778 NA coding downstream 103780 15655371 ~ 15677438 (-)
AMCG00001779 NA coding downstream 126377 15642819 ~ 15654841 (-)
AMCG00001777 ppp2r5d,LOC106605890 coding downstream 140585 15612676 ~ 15640633 (-)
AMCG00001774 NA coding downstream 205821 15552693 ~ 15575397 (-)
AMCG00001789 degs1,LOC106606739 coding upstream 14605 15798760 ~ 15817684 (-)
AMCG00001788 NA coding upstream 34128 15818283 ~ 15827775 (-)
AMCG00001790 rasgrp3,LOC106576952,LOC106606711 coding upstream 52869 15837024 ~ 15850756 (-)
AMCG00001793 NA coding upstream 66632 15850787 ~ 15865923 (-)
AMCG00001794 ltbp1 coding upstream 95473 15879628 ~ 15936565 (-)
G160319 NA non-coding downstream 170502 15603843 ~ 15610716 (-)
G160311 NA non-coding downstream 185863 15594607 ~ 15595355 (-)
G160132 NA non-coding downstream 1217713 14559152 ~ 14563505 (-)
G160094 NA non-coding downstream 1287569 14491898 ~ 14493649 (-)
G160085 NA non-coding downstream 1300859 14474242 ~ 14480359 (-)
G160387 fbxo28,LOC106576958 non-coding upstream 7841 15791996 ~ 15796358 (-)
G160538 NA non-coding upstream 450260 16234415 ~ 16235803 (-)
G160548 ryr2,LOC107395022,LOC102799451 non-coding upstream 531172 16315327 ~ 16315563 (-)
G160631 NA non-coding upstream 1032784 16816939 ~ 16817195 (-)
G160640 NA non-coding upstream 1070498 16854653 ~ 16854957 (-)
AMCG00001784 NA other downstream 78718 15691569 ~ 15702500 (-)
G160255 NA other downstream 260579 15504311 ~ 15520639 (-)
AMCG00001771 banf1,LOC105900308,LOC107086546,LOC106536379,LOC106576720 other downstream 279425 15499553 ~ 15501793 (-)
AMCG00001756 NA other downstream 1210291 14550689 ~ 14570927 (-)
AMCG00001733 NA other downstream 1308059 14463730 ~ 14473159 (-)
AMCG00001791 fam98a other upstream 44603 15828758 ~ 15833806 (-)
AMCG00001843 NA other upstream 1307198 17091353 ~ 17092549 (-)
G160817 NA other upstream 1746711 17530866 ~ 17531990 (-)
AMCG00001865 NA other upstream 2023863 17808018 ~ 17810097 (-)
AMCG00001863 LOC105006094,LOC104951035,LOC101160874,LOC106578938 other upstream 2075984 17860139 ~ 17865379 (-)

Expression


Co-expression Network