AMCG00001796


Basic Information

Item Value
gene id AMCG00001796
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 16018913 ~ 16025403 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001796
ATGGTGCGGGACGTGGAGGTGCCGGTGCTGAGGGGGTTTCTGACAGAAAGCGAAGCCCCGGGGTGGAAGCAGGACGTGTTGAGTGCTCCAGAAAGCGGCCCTTTGCTGCAGTCTCTGCTCGAAGGAGAGTTCCAGGCGGTGTTATGCAGTCCGGTGGTCCTGGCCGTCCTGAGTGCCGGGGGGGTGGCGGACGAGAACATCGATGTCTTCCTGGAGAACATGGTCCTGGCTTATCTGAGCAACTCCACGGAGGAGGACAAAGCCGAGAGGGAGACGGTGCTGTTTGTGCTGGCGGTGGCCTGTCTGCAGCTCTTCGCCCAGAGTAACTGGACTGGCCCACCTGTTCACATCGGGACCCAGGACGTCCTGCCCCCGGCTTTGCTGCAGCGTTTCTCTGAGCCCCACGAGCTCGATGCCGCTGTGCTGGCCTGCCTGGTTCTGGACGGGGAGTCTGTGTACGGCCTGGTCTCCAATCCATTCCTGCTCCTGGTAGCCCGAGTGCTGCTGGTCAACTGCAGCTCCAAACTGGAAAGCTTTCAGCTGCTGCCCTGGTGGACTCTGCGATGTGTCGCCCTGCACCAGCAGCTGCTGGAGGAGCGCTCGCCCCGGCTCCTGCACGAGGCGCAGGACAGCATGCAGAAAGCGGGCGGTGGGGCTGTCCTGTCGTGA

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001796 True 669 mRNA 0.63 6 16018913 16025403

Neighbor

gene id symbol gene type direction distance location
AMCG00001795 NA coding downstream 27655 15967103 ~ 15991258 (-)
AMCG00001794 ltbp1 coding downstream 82348 15879628 ~ 15936565 (-)
AMCG00001793 NA coding downstream 152990 15850787 ~ 15865923 (-)
AMCG00001790 rasgrp3,LOC106576952,LOC106606711 coding downstream 168157 15837024 ~ 15850756 (-)
AMCG00001788 NA coding downstream 191138 15818283 ~ 15827775 (-)
AMCG00001798 birc6 coding upstream 5191 16030594 ~ 16045657 (-)
AMCG00001809 LOC106606575 coding upstream 40881 16066284 ~ 16114113 (-)
AMCG00001808 yipf4,LOC106606648 coding upstream 89790 16115193 ~ 16120336 (-)
AMCG00001810 NA coding upstream 121434 16146837 ~ 16148575 (-)
AMCG00001803 LOC107680460,LOC102314080 coding upstream 142460 16167863 ~ 16170455 (-)
G160387 fbxo28,LOC106576958 non-coding downstream 222555 15791996 ~ 15796358 (-)
G160319 NA non-coding downstream 408197 15603843 ~ 15610716 (-)
G160311 NA non-coding downstream 423558 15594607 ~ 15595355 (-)
G160132 NA non-coding downstream 1455408 14559152 ~ 14563505 (-)
G160094 NA non-coding downstream 1525264 14491898 ~ 14493649 (-)
G160538 NA non-coding upstream 209012 16234415 ~ 16235803 (-)
G160548 ryr2,LOC107395022,LOC102799451 non-coding upstream 289924 16315327 ~ 16315563 (-)
G160631 NA non-coding upstream 791536 16816939 ~ 16817195 (-)
G160640 NA non-coding upstream 829250 16854653 ~ 16854957 (-)
G160682 NA non-coding upstream 950045 16975448 ~ 16975879 (-)
AMCG00001791 fam98a other downstream 185107 15828758 ~ 15833806 (-)
AMCG00001784 NA other downstream 316413 15691569 ~ 15702500 (-)
G160255 NA other downstream 498274 15504311 ~ 15520639 (-)
AMCG00001771 banf1,LOC105900308,LOC107086546,LOC106536379,LOC106576720 other downstream 517120 15499553 ~ 15501793 (-)
AMCG00001756 NA other downstream 1447986 14550689 ~ 14570927 (-)
AMCG00001843 NA other upstream 1065950 17091353 ~ 17092549 (-)
G160817 NA other upstream 1505463 17530866 ~ 17531990 (-)
AMCG00001865 NA other upstream 1782615 17808018 ~ 17810097 (-)
AMCG00001863 LOC105006094,LOC104951035,LOC101160874,LOC106578938 other upstream 1834736 17860139 ~ 17865379 (-)
G160925 mta3,LOC105904126,LOC106516625,LOC107749351 other upstream 1883351 17908754 ~ 17910853 (-)

Expression


Co-expression Network