AMCG00001805


Basic Information

Item Value
gene id AMCG00001805
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 16132685 ~ 16146802 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001805
ATGCCCAGGAATTACACAGAAACTCAAAAATGTCGCTACGTAGAGAAGCAGCGCTGGGGGGAGGGTGGGAGAACCACCCCAGGGTCGAATTCCACTGGTACATTGAAAACAATCAGAAATCTGGACAATGTGAAGAATTACTCTGTGAAGCTGGCAGCACAGAGCAATAGGCTCCCCAAGACACAGAGTCACAGGAATACTGCAGCTGACAACATCACTACATCTGCCAGGAACCTTTACTCAGAGCTCCGCGAGATCGGACACAAGAGGAACAGGAGTTTCTCGGACAGCTTCGTCCTTGAAGACACAGAGAAAGGCGGAGTCGTCGTTAAGGACATCAAAGACGATGCTTGTGGGCTGAAGAGAGgggcGTATAGATAATGAATACGACAAATTATTCAACAGCAAGATCAAGAAATACCTTCGTCCTGAATCCGCTACACTGGGACGTATTACAAGACCAAATATTAAGGGTTTGAATGGACAACTGAGGAATCCTGAAGCTCGTGTCTCAAAACCCAGATTCACCGTTCCAGGTGCTGACCTAGACATTGAAGGACCACAGCTGAAGGACGGACAATGGCCCAGTGCTAAAATGGGTGCTCCAAATGCTGAACTAAATATGCCCAATGCTGGGATACCTTCCACTAGAGCAAGTATACATGGACCTGACATAGACATTGATGGCAACCTTCAATCCCCTGATGTTAACTGGTCACTTCCAAACATGAAAGCTCTTAAATTGAATGTCAAAGACTCTAATGTTCTCCCAAAACTGAATGGACCTGAAGTAGACTTAGATGGTCAGATTCCAAGTGAAGATATTGACTTGTCAGCCCCCAATTTGAAAGGTGGCATTAAATCTCCCAAATTGAATTTAGATGGACCAAGTGCAAAAGTTAAAGCTCCAAAATTTAAAATGCCCACTTTTACACATGACAGTCCAGACCTGAATATTCCAGGAGTGAAAGGTGGTGTGAATATGTCAGCTCCTGGCCTTCAAGGAGACCTCGAGGGCCCTAACATAGATGTCAAAGCACCAAAAGCAAACTTAAAATCTCCAGACATCAACATTGATGGCCCTGGGGGGAAATTCAAAATGCCTGACATTGGGCTATCTGGACCAAAAGTGAAGGGTCCAAACATGGACTATGATGCAGACATAAACACACCAGACNNNAATCTCTCAGCTCCTAAGATCAAGGGAGGATTCAATACTCCTGACTTAGATGTACATTTACCAAATGCTGATCTGAAAGGACCTAATCTTAATATGAAGGCCCCCAATGTAGGCATCAATAAACCTAAGGGAAAATTCAAGATGCCTAATTTTGGATTTTCTGGTCCCAAAGTTAAAAATCCAGATTTGAACATAAACACACCAAATATTAAGGGAGATTTTGATGCATCTCTGTCTAAGGCCACGTTACCTAAAGGAAACATACAATTACCAAAGTTTAAAACTCATACACTACCTGATGTTGACTTTGATCTGAGCCCTCCTACACTAGCAGGGAGTGGACTTTTCCCCACTCCGAAAATGGATGGTCCTGATATTAATTTAAAGGGACCTAAAGCAAGCATCCAAGATATGGATTTGGAGGTTCCAGGTGGAAAGACAAAGAAATCTAAGTTTAAGATGCCATCATTTggaatttcaaataaatcactgaaagGCCCCAAGATTGATCTGGATGCTAACATGCCCAAAGCAGATCTTTCAGATCGAGGAATGACCTTGCCATCCGTACATCTTTCTGGTCCAAATGCATCTGTTCCACAGGCTGACCTGAACCTGAAAAGTCCAAAAATCAAGGGAGGTTTAGATTTAACTGCACCACAGTTTCAAGGTGGCTTAAAGGGACCCAACATTGATGTACCAACCCTAGAAGGTGATATTAAAGGTCCAGGTATGGATTTCAGCACACCCAAGGCCAAACTATCAGGACCAAATTTGAATTTTGATACACCAAAACTAGCAGGAAGTCTGAACAGTCCAAACTTCAAAGCAGAAGCTCCTAGCTTAAATATGAAGGCTCCACATATTGATGTACCTCATGCAAACATTACCGTTCCTAAGGTAAATGCACCCTCCTATGAAGATTACTTACTAAATGTGGGAGGGCTTGATAGGGGGCTGGAGGCATCACCATCAAATATTGACGTCACTGGAAAACTGCAGACATTCAAAGACTCGTTGTCTGGACCAAATATAAAAGGGGAGGTCGATGCACCTAATCTACAAGTCAGTAGCcgagatggaaaaataaaaagtggaacATTTAAACTCAACAAGTCTACAGCAGATGCTCAAAAAGAGTATGACCTCCCAGATACAAATGATGACAATTCAAGGTCTTTTAATATTCCCAACATGATTGGTTTGGGCAATAATAAAGAATCACTCGACAAAGAGCACTATTCCCCCGATTCATATTCAGCTGATTATAATTTCCCATCAGTTGATCTTACATTGTGAGAACTCTCCAGTAAGCAATATTACTGCAATAATTCCGAatgcataaaatacattcagGACAGTTACATAAATACCCTTGAAAACCAATTGTATGTAATTAATATGcatcaataaattattttaatgtaaatatagtcatgtaaaattgtatttgcacTTTTGCTTGAACAAAAATCTTTTCACTGGATCTTATTTTCTGAAAACGATGTATAAATTATATGGTGCCATGTTTAAGTTTTATAGATTGAGAGAAAGTTGTTAAAattgtctctttaaaaaaaaaatgtaatatattaattatttactagCTGGTAATGTttccatgcatttatttttgctgttaaTGTATAGCTATGTACTTTTTGCACATACCTCAATACTATCATATTTAGGCATTGTCCATTTGTTAAAGATACATGTTAACTTGTTCACGTTAATATGAATTCAGTTTTACACGTTCCTTTCTACACTTGGCttaaatataatgaatgtataTCTAAATAttgtatcatttaaaacaaaagatgaattgtaataaaaatgtttaaaaaatattgtaatttgctttttattataaacaacatGTAAAACGGTTTCATTAAGAATACATCTAACATTTTGATATTAAATGACCTGAACGGTTTTGTGTTCAGATTAAAATGAAGAGTGCAGGAGGGGAGTGTaaaaactttcaagcatttcacCTGAGATCAAAGAAAATATGaccaaataattaatttaactggAAGTtggagataaaataaaaatctgtactACATAGATTGCATCTCTGCATTCtaaagtaatgtattttaatgtggaTAATACATTCTAATTGCATTTGAATGTATAAAAGGAGCAGGGTACTATCCACACATTTACAGGAAACCAgagacatttatttacattttataagttCTCTTTTTCCAGGGAATTTACCCAGGTGTGACCAGACGTAATCGTTTTTTCGGAAATTATAGACAACCTCAGAAAGATACATACTGCAATAAATAGGAGAAAAGTCTGCACACGGGCAGCAATATTTtcaagaaactgaaaaacatacatttagtgAAAATaccagtaaaacattttaaatattttacacatgcATCGtcttacagaaaagaaaattaaagcaCAGCTGTGGACACCAGCATCGCAGTGACGTTAACCTGCCCCCGTTTTGCAAAACAAGTCACTACATTCACAGCTGCGgtgtaaaagcaaaatacaagcGTTGCTCTATCATTTTTGAAAAACACCAAATACACTGTCAATTctgtaaatcacttttttaaaaGGTCAAAATTTACAAAAAGCCACCCAAAAATcctaaatcaaaattaaataaagcataatCTGATTTTTAAGCAGGTCAAGTAAAATTTGGGCAGAATGAAGGTTGATACTGACAAGagaatatacataaaatataccaAACAGCCAGGGCAAAGTCACCATCAAAAAAGTAATGCTTTAACACCATACTTAGACAAGAATTGAAGGCACTTTTTGTATCTGTggatatatttttgtctgttcATGCTACTTGCTTTATATTAATTCAGATACCTTATGCTCACTTACTGCAGGAATCTTATAACAGAGTCAGTATTGAAATAAGTACAATTAATCACAACTGGGGAGCATTTAAACAGACATAGTGTAGTGAGAGGCAATAGCAGAGCTGTAGTCAACCGCAATTTCAGTTGTGCAATTTGTAACTACAGATCCCGTTCCGAAAGTGAACAGCGGTTTCGTTTTAATTGGAGTTGAGCCCTGGCACAACTGTTCCAGTTACACAGAGAATTCATGCAGTTAATTACAGTTCACTTATTTGCCATTGCTCATTTATGTGTAACTCATTTAATAACCTTAGACATAGGCAATGCACTGCATATCAATGTCAGTTTACTGAATGACACTCACAGTAGCATTGTTAACTTTGTTTCACAACCACTTGACCAATATTTCACAGGTTCATCACAGGTTTGTCACACTGAGCAATCGGTATACCGTCAGTTTCTCATATTTTCAATCATTGGGTCTCAAGTCAAGAGATACTCCAGCCAGCAAAATCGCCAAAAGGATAGAGAGCCACCAGCCATCTAGTAGCAACGTACTGGGGCCTGCACAGCTAGACATGAATGATCCAGTAAGACCAGCCTTCTCGGCCTCAGACGAGCACCAGCTTTCAGCGTCTCTCTCCCACAGGTTGGGTTTGAGGAGCTCAGATGTATTTCAGGACACAACAGATGGACTGATAGTTATTAGAAATCATTCTTAACAAATAAAGGCTATGAAGTTTGTCTCCATTTCTAATTGTGTACATTGAAAGAAGTGTGATTGTTATTGGACAAAACATAACTATCACTAAGTCCAGTAAACAATGCTGCTGAACCAGTAACTGTTTATAATTGACCTCAGGTCTGTCAAAGGTGGTAATTACAATATTCAATGTACTACAATGCATACTACTGCAATACTTAATAATTTCAAAAGTCAAGgaaaaattaagaaatctgcttataaaataaattaaaaatagtctgAGGCTGGCGAGCTCGTGACACTACTGTCACATTACAAATAACATTGAAACACCCCACTGACGATATGCAAATGCTGTCACTTTTCACATTATCCGGAAGAGAAACATGTCTTACATTTCCTGTACCTCCTCACAGTTAACACCGAAACCGAATGAGATCCAGGACCTGACATTATCCCTAATTTCTAACTGGTAGccggtttatttatttattattagtatttattttcatttagttgTGAGACAGATGTAAGTGTGAAATTTGAACAAGGCCTTAgggtttgattaaaaaatgtacacctCTGAACCACATTTAGGTTACAAGTAAATCAGTGTATTTTGAATACAGTCTTCTTGGGCTCCAATGCAGCAGGGTTTAGGAATCTCTTTAAGCGTTACCCTATTTACACCTGGGAAAATGGTCAAATTGGCACAATGAAGTAAAGAGATGTTGCCATTATCTAATTAAGACCTCAGCTGGAGTGAAACCCTGGCTAGTGCGAGCCTCAGGTTTTGGATTTGAAGGATACTCTCATAAGAGTTTCCTCGATCCTACTGATAGTGGACTTCTTTATTCACTCAATGTAAAGGGACACAAATTCAGGTCAGGCATTCCTCAGTTTAAAAGCCCATCCAATTAGCACCTCTGCATGCCTCTCAAATGTCTTCTCTTCATTGAGTTTCAAATGCATCATATGAATTAAAATCTGTCAATGTTTTCATGTGGTCAATTCCACAGTTTGTATGTCTACAGCTGCTATAcgagaggattttttttttacacatgtAAGCACACATAACAGTCGGGTATGGAAGAATGTACTCCTGTCGTCCTTCTCTTCATAGTATCAAACGTGTCCGATAAAACAGAGGGACATTTTGTAAACGTCTCTCTGGGTGGCACACAAACCGACTGGAATTTCGACTGTTCTTTGGATCATGCTTCAAAGCACCTTTTTGAAATCAGGTCATAATGTGAGGAAACCAGAAATACAATACCTTTGGAAAGGTTTACAGGCCTTTATGTTCCACCTCAAGGAAATTAACTTGTTATAAGCCACTGGTATATGTGAGGATGCACAAAAGTTCAACCGTCCACATGAACAGAAAGCCCGTGATGTCTCCACACCCTCCTCTGTGTGCATCTCGTCACCGAGACCTGAGCCGAACGTGAAGTCAGTGCCGGGAAGCCAGAAGCGCCGGCGGCATGTTTCTCTATTTCATTTTCCAAGCAACTAGTACGAGAGCAAACAGGAGTTTCCAGTATCAGTGACTGTTTCCCTGTTTatgataaacaaacacaaataaacaaaaccaaacaaaaacttaaacACGTGCACTCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001805 True 6378 mRNA 0.38 6 16132685 16146802

Neighbor

gene id symbol gene type direction distance location
AMCG00001806 LOC107744706,LOC107081139 coding upstream 2404 16123040 ~ 16130281 (+)
AMCG00001797 NA coding upstream 72269 16054523 ~ 16060416 (+)
AMCG00001785 degs1 coding upstream 329004 15798933 ~ 15803681 (+)
AMCG00001786 fbxo28,LOC106606749 coding upstream 336250 15788706 ~ 15796435 (+)
AMCG00001787 rpac1,polr1c,LOC106576959 coding upstream 344247 15784945 ~ 15788438 (+)
AMCG00001807 NA coding downstream 13742 16160544 ~ 16167624 (+)
AMCG00001800 LOC105010553 coding downstream 52346 16199148 ~ 16222274 (+)
AMCG00001799 mtr coding downstream 75942 16222744 ~ 16236002 (+)
AMCG00001813 NA coding downstream 408178 16554980 ~ 16559554 (+)
AMCG00001812 NA coding downstream 422040 16568842 ~ 16587126 (+)
G160464 NA non-coding upstream 13419 16117205 ~ 16119266 (+)
G160463 NA non-coding upstream 17986 16114344 ~ 16114699 (+)
G160375 NA non-coding upstream 302919 15828776 ~ 15829766 (+)
G160200 NA non-coding upstream 715131 15402285 ~ 15417554 (+)
G160144 NA non-coding upstream 1431229 14701134 ~ 14701456 (+)
G160542 tubb4b,LOC106575097,LOC105893757 non-coding downstream 130004 16276806 ~ 16278054 (+)
G160648 NA non-coding downstream 753093 16899895 ~ 16902440 (+)
G160649 NA non-coding downstream 758447 16905249 ~ 16910033 (+)
G160782 NA non-coding downstream 1261455 17408257 ~ 17408616 (+)
G160869 NA non-coding downstream 1651397 17798199 ~ 17804178 (+)
AMCG00001762 NA other upstream 693654 15432337 ~ 15439031 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other upstream 798105 15331620 ~ 15334580 (+)
G160026 NA other upstream 1862495 14269615 ~ 14270190 (+)
AMCG00001691 NA other upstream 3798985 12329979 ~ 12333700 (+)
AMCG00001645 NA other upstream 5374827 10747489 ~ 10757858 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 90460 16237262 ~ 16377860 (+)
AMCG00001841 NA other downstream 1032792 17179594 ~ 17182601 (+)
AMCG00001846 NA other downstream 1270549 17417351 ~ 17462934 (+)
AMCG00001881 NA other downstream 2041100 18187902 ~ 18209391 (+)
AMCG00001883 NA other downstream 2063207 18210009 ~ 18217138 (+)

Expression


Co-expression Network