AMCG00001811 (fmn2,LOC108413081)


Basic Information

Item Value
gene id AMCG00001811
gene name fmn2,LOC108413081
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 16605907 ~ 16635015 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001811
GCTGTCTTGAACTTGGACAACACCGTGGTTGACCTGGAGACCCTGCAGGCCCTCTATGAGAACCGAGCACAACAAGAGGAGATGGACAAAATCGAAAAGCATGTGAAGTCTTCTAAAGAGAAAGAACATTCAAAACCACTGGATAAACCAGAACAATTCCTCTTTGAACTGTCGCAAATCCCCAATTTCTCAGCCAGGGTGTTCTGCATCCTGTTTCAGTCGTCTTTCACAGAATGCATATCCTCAATCCTCCGCAAGCTCGAGATCATTCAGAAAGTCTGCTCGACATTGCAGAGCAGTTCAGGGGTAATGAAGGTCCTCGGGCTGGTCCTCGCTTTTGGCAATTTCATGAACGGTGGGAACAGGACGCGAGGGCAAGCGGACGGCTTTGCGCTGGATATCCTGCCGAAGCTCAAGGACGTGAAAAGCAGTGACAGCAGTCGAAGCCTCCTGTCATACATCGTCGCGTACTATCTAAGACACTTCGACGAgGACGCGGGCCGAGAGAGCTGCATCTtccctctccccgagccccagGACCTCTTCCAGGCGTCTCAGATGAAGTTTGAAGATTTTCAAAAGGATTTGCGCAAGCTGAGGAAAGACCTGAATGCCTGCACGACCGAGACGGAGAAGGTCTGCCGCGTCTCGTCCGAAGATCACCTGCAGCCCTTCAAAGACAAAATGGAGGAATTCATCGGCCAAGCAAAAATCGATCTGGAGGCGCAGGAGATCCAGCTGGCCGAAACTCACAAAAGcttCTTGGAATTAGCCGTACTCTTCTCCGTCAAAGCTAAAATGGGAGAAAAGGAGGTTTCGCCAAACACGTTCTTCTCCCTGTGGCACGAGTTCTGCACCGACTTCAAGGACTTGTGGAAGAAAGAGAACAAGTTGATCCTACAAGAGAGactGCGGGAAGCTGAGGAGTGTTTCAGACAAGCGAAAGAAAAGGCTTCATACAACGTCCGGCCCAAGCATGACTCGGGAATAaaagcAAAGCTGAGCATGAAAATCTGAAGGGCTGATGGGAAGACTAGTTTGATGTCCTGCAGAGTGATGGACACACCAGGATAACGAAAGAAGAGGGGGAGACAGGGAAAAAGATATTCAACTATTAAAGAATTCGGCACTTGGgctttttatgattttttattttttctttaagaagCACGATCTTCCTGTCCTATTCGTTTGGACAAGGTagagctgttttgtttttgtaagtcGGACACACAGATCCTCTCCTGAAGACGGGCGTCACCTGGGATGACCTGGGCGTCCGCGGTGGCGCCGGTACTCCCCGACTCTCGCTGAAACAGACGGATTACATAATATTGCGTTAGGCGCTCGCTGGCCTGTCGGTACAGTTGCTCTCCTGATGGAGCGCCTGCccggttctctctctctctctctctctctctctctctcgttgaACTCGCTCGCCTGTTTCAGACACCTGCAAAACGACTCGTACTCGTCCGACCTCTCCGATCTCGGTGTCGTGGTGCATCATGGGATTCGTAAGCAACAGAGACGCGGGCACCTGTCTCTCGAGAACATATCTGTTTCACCtctgtgtatatgtaaatatgaagACTCAATGAATATCACATCTGGGAGAGGACGAGAGCGCCGTGTCCAGACGATGGCAGTGAATCTTATGATCTCAGTGACGGTAGCGTCATTTTTAGGCCGGTGGGGAAATGTAACCGCAGTGTATTCCACTGTCTCCGGTGCCCAGTCTGCAGAGCTGCTACATCCCCGCTAAACCAAGCTGTACAAGCAAATGgagaaaaccaacaaacaaaacagactgaATTATAAATGCAGGTCATTTCCGTATAAATGTACAAGATGGTCTTAAAACTGTTCTCTGAGAATAAACCGATAGGATATTCTTCCCCTGTGCTGAACTGAATATCTTCATGAGGTCAGTTCTCACAatggtatttatttgtgttcatatGTAAAGCTTTTCAATTGAAAGTGGCTTTCAGTAGCTGTTGTAATTCCCTCATGGTCCCTGTTGATAGCGAATCATTGTCCAACTGCACTTTGAGACCTCAGTTCAGGTTAGAACCCGTTCAGTCAAAATGTTTTGGGTGTTAAAGCTCCTACAAAACATCAAGAGGTATGTTTCAGAGGCTTTGACATGACAGCGCTTCCCTAACTGTGTAGCAATTAATTCGTCTGCTATAGCTCTGCAGTGAAGAGATGAAAAATTAACGAATTGATATTTGTCACAGTTTGTCAGAGGGCTGTGTTTGGAGGGGCCATTGAAACTCAGAAAATAGGAATTCAATTCGTTACCTGTCACCGGTTACCCACCTGTCACGTGACTCTGAGTTTGGACATGTTGGTTTAATATGAGATCTAAACCGGCCAAATCAGtgcataaaaaaaagttttaaattatgaaGAAAACTATTGTGCACACTCTTGACAGATCATCAGGAATATTGACCGAACATTTGAGCTTTCTCTTTTTCGTTTCTAAATTTTAAGATTTTCGATGTACATGAAATGGTTAattggttaaaaaatatatatattttgaaaaattgtCAGACCGAATGAAGAAACTTAACTATATTGTCGCCCATGGGGGGGGATCAAATACACTGGGAAATCATGTTTATATTTGAGCTTCAAGGCGTTGAGtgggattttaaaatgcattctctATTTCTTTGCAAGTGTCACGATTCTCTGTAAATTAAAGACCTTCTGGAAGAACTATGAATTACATTGACTTGCAAATGACTTAACTGGGTTacttaagttattttaattgctatactttgattttatgtatgtaaagtAGTATTAACATCTTTCTGTACCTAACCTGTCCCTTGATTTTTACTCTTCTTAGCATGTTGGTTCTGTGCCcaatgtgtgtaattgtactATTCTGGAGTTCTTCTACAAGACGTATCACCACGTGCAATATCATTAAAAGTGTTTCtaattagtctttttttttttttttccca

Function

symbol description
fmn2 Enables actin binding activity. Involved in several processes, including cellular response to hypoxia; formin-nucleated actin cable assembly; and positive regulation of double-strand break repair. Located in cytosol and nucleolus. Colocalizes with actin cytoskeleton. Implicated in autosomal recessive non-syndromic intellectual disability.

NR:

description
PREDICTED: formin-2-like isoform X1

GO: NA

KEGG:

id description
K02184 FMN2; formin 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001811 True 2996 mRNA 0.44 11 16605907 16635015

Neighbor

gene id symbol gene type direction distance location
AMCG00001812 NA coding upstream 18781 16568842 ~ 16587126 (+)
AMCG00001813 NA coding upstream 46353 16554980 ~ 16559554 (+)
AMCG00001799 mtr coding upstream 369905 16222744 ~ 16236002 (+)
AMCG00001800 LOC105010553 coding upstream 383633 16199148 ~ 16222274 (+)
AMCG00001807 NA coding upstream 438283 16160544 ~ 16167624 (+)
AMCG00001815 LOC106911852 coding downstream 127431 16762446 ~ 16770159 (+)
AMCG00001825 NA coding downstream 181961 16816976 ~ 16821826 (+)
AMCG00001824 NA coding downstream 230475 16865490 ~ 16869319 (+)
AMCG00001820 NA coding downstream 235381 16870396 ~ 16897808 (+)
AMCG00001818 NA coding downstream 311509 16946524 ~ 16951511 (+)
G160542 tubb4b,LOC106575097,LOC105893757 non-coding upstream 327853 16276806 ~ 16278054 (+)
G160464 NA non-coding upstream 486641 16117205 ~ 16119266 (+)
G160463 NA non-coding upstream 491208 16114344 ~ 16114699 (+)
G160375 NA non-coding upstream 776141 15828776 ~ 15829766 (+)
G160200 NA non-coding upstream 1188353 15402285 ~ 15417554 (+)
G160648 NA non-coding downstream 264880 16899895 ~ 16902440 (+)
G160649 NA non-coding downstream 270234 16905249 ~ 16910033 (+)
G160782 NA non-coding downstream 773242 17408257 ~ 17408616 (+)
G160869 NA non-coding downstream 1163184 17798199 ~ 17804178 (+)
G160895 NA non-coding downstream 1225147 17860162 ~ 17861427 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other upstream 228047 16237262 ~ 16377860 (+)
AMCG00001762 NA other upstream 1166876 15432337 ~ 15439031 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other upstream 1271327 15331620 ~ 15334580 (+)
G160026 NA other upstream 2335717 14269615 ~ 14270190 (+)
AMCG00001691 NA other upstream 4272207 12329979 ~ 12333700 (+)
AMCG00001841 NA other downstream 544579 17179594 ~ 17182601 (+)
AMCG00001846 NA other downstream 782336 17417351 ~ 17462934 (+)
AMCG00001881 NA other downstream 1552887 18187902 ~ 18209391 (+)
AMCG00001883 NA other downstream 1574994 18210009 ~ 18217138 (+)
AMCG00001880 NA other downstream 2028980 18663995 ~ 18673815 (+)

Expression


Co-expression Network