AMCG00001820


Basic Information

Item Value
gene id AMCG00001820
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 16870396 ~ 16897808 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001820
ATGCTGGGAAGACTTGCCTTCCAGGACCTGGTCGTAGTTCTCGCCGGcaagaacaaatatttgaacagGAACGCACTCACTCAGACAGCATCTCTCCTGCAGATGATCGCCGGATTTGTAAGTTATGTCACGGCCCACACGGACACCgaagaggagctggaggaggggaGCCGGCCTCGTACCCCGACGGACCCGACGAGGGACGACTCGGAGGAGGAGCAGGACGATTGGACCGTCCTCATGAAGAAGGCAGATCGGTTACACGGGGGCCCCGAGTCGGAGAAGAAGGAAGGGTTTATGATGCTGCTGGAGAAAAAGGCGGAGTTTGATCAGAGAGCTGCGTTTCTGTGGCGTCTGGCGCGGGCGTATGGAGATGTGTACGACATGACTTCAGATGTTGAGGACAAGAAGAGCTATGCAGAGGCTGccCTTTCTGAAGATCTGATTTGTGGCTTAGAAACCATACCATCGTATGCAGAACACAAAGAAGACAAGgcaGCAATCCGGTTCGCCATCATGTGCGGCTACGTGTCCGAGTACGAGACCGTGCAGAACAAAATCAAGAATGGCTATCTCTTCAAGgtggggggtggggagcaAAAGGCGCTTTCACAGGCTGTGGCCGTGAGATTTATTAGCCACAGCCCAGTCCTGATTTTAATCTCCTCGGCCTCTGTGGGGCGTGGAGCCGACTTCAGAAGCTGGGACACACGGGAAACCGGGGCAGACATTGTCAGGATTGCACCCAACCGGGCAGGATTTGTCCTCTTTCCGCTTTGTCAGGACCATCTTGATAAGGCGATTGAGCTGAAGCCTCAGGATCCGCTCTCGTACTACCTGTTGGGAAGGTGGTGCTACGCGGTCTCCCAGTTATCGTGGATTGAGAGGAAAGTCGCCGCGGCTCTTTTTGGAGACCCACCGACGGCAACTATACAGGATGCCCTGAAATATTTCCTCAAGAGCGTGCTGCCGGTTCTTGGCCCACAGCTGCGTGAAACTGAACGTTGTCTTTCGTTGAGAGAGAGCTCGGACACCAAAAATGTGTCTATGgTAGAAGAAATCCGTCCAAAGTATTCcaaatttaattatgtatttttagcaaAGtgttacaAGGACCTCGGACAGCGCTCCCGGGCCCTGCAGTGGTGTGACGCCGCCGCTTCGCTGGAGATCGTTTCTAACGAGgatAAAGAAGCCCAGAAAGAGCTGGACTTGATCGTTTCTTCTCTCACGGCCTGCTCTCAGATAGCCCTCACCGTGGAAAAGATGGCTCTATTGCGGAAGCTGCCATGTTTTCCGGGACCCCGAGCCAGTGCTTTAAAAAGAAAAGACAAGCGTTTTCTCTTTCCGAAGCTGGGTGTTACTGGTTCTCCAGGAGACTCTTGGAAGAGCTGCCCAGAACAGGCCTCCTCCAGCGCGGCCGCTTCTCTCACTGAACCCTCTCGAaGCGCGCTCTGTGCTGGTGACGGGAGACGGCCGAGAGTTTACAATCGCCGGCGCACTGCGCTGAACcagactgtctctctctgtgctttgcAGGCGTTTAACCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001820 True 1551 mRNA 0.54 17 16870396 16897808

Neighbor

gene id symbol gene type direction distance location
AMCG00001824 NA coding upstream 1077 16865490 ~ 16869319 (+)
AMCG00001825 NA coding upstream 48570 16816976 ~ 16821826 (+)
AMCG00001815 LOC106911852 coding upstream 100237 16762446 ~ 16770159 (+)
AMCG00001811 fmn2,LOC108413081 coding upstream 235381 16605907 ~ 16635015 (+)
AMCG00001812 NA coding upstream 283270 16568842 ~ 16587126 (+)
AMCG00001818 NA coding downstream 48716 16946524 ~ 16951511 (+)
AMCG00001819 NA coding downstream 72012 16969820 ~ 16976960 (+)
AMCG00001830 fbln7,LOC106589727 coding downstream 97847 16995655 ~ 17008469 (+)
AMCG00001831 sft2d1 coding downstream 157673 17055481 ~ 17066501 (+)
AMCG00001836 NA coding downstream 172074 17069882 ~ 17070658 (+)
G160542 tubb4b,LOC106575097,LOC105893757 non-coding upstream 592342 16276806 ~ 16278054 (+)
G160464 NA non-coding upstream 751130 16117205 ~ 16119266 (+)
G160463 NA non-coding upstream 755697 16114344 ~ 16114699 (+)
G160375 NA non-coding upstream 1040630 15828776 ~ 15829766 (+)
G160200 NA non-coding upstream 1452842 15402285 ~ 15417554 (+)
G160648 NA non-coding downstream 2087 16899895 ~ 16902440 (+)
G160649 NA non-coding downstream 7441 16905249 ~ 16910033 (+)
G160782 NA non-coding downstream 510449 17408257 ~ 17408616 (+)
G160869 NA non-coding downstream 900391 17798199 ~ 17804178 (+)
G160895 NA non-coding downstream 962354 17860162 ~ 17861427 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other upstream 492536 16237262 ~ 16377860 (+)
AMCG00001762 NA other upstream 1431365 15432337 ~ 15439031 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other upstream 1535816 15331620 ~ 15334580 (+)
G160026 NA other upstream 2600206 14269615 ~ 14270190 (+)
AMCG00001691 NA other upstream 4536696 12329979 ~ 12333700 (+)
AMCG00001841 NA other downstream 281786 17179594 ~ 17182601 (+)
AMCG00001846 NA other downstream 519543 17417351 ~ 17462934 (+)
AMCG00001881 NA other downstream 1290094 18187902 ~ 18209391 (+)
AMCG00001883 NA other downstream 1312201 18210009 ~ 18217138 (+)
AMCG00001880 NA other downstream 1766187 18663995 ~ 18673815 (+)

Expression


Co-expression Network