AMCG00001828


Basic Information

Item Value
gene id AMCG00001828
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 16839394 ~ 16840260 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001828
ATGCCGGCCAAGACGCCCATCTATCTGAAGGCAGCCAACAGCAAGAAGGGGAAGAAGTGCAAGCTGAGGGATATCTTGTCTCCCGATCTGATCAGCCCTCCACTGGGAGACTTTCGCCACACCATTCACATCGGCAAGGGTGGGGAGCAGGATGCTTTTGGAGATATGTCATTCCTACAGGGGAAGTACGACCTCCTTCCCGGTAAAGAGGAGCAGGTGTCACCGCAGTACGTGGCGTGCAATGAGTTCTTCAGGGCAAACAGCACCTGTGATGCCACTTTTGCAGAGACTCCGTCACCGGTGTTGAAAAACGCCATTTCTCTCCCAACGATTGGAGGTTCACAGGCTCTCACTCTCCCCCTGCTGTCCGCCGTGACCTTTCCCACCAACCCCGAGCCCTTAGACCCTGTGATTGAACCAGCACTCGGCTCTGaggagacacagagaaacagcttCCTCCTCTCCATGGATATTTTTAATCCGAAACCCAGCCCCACCAAGAAGACCACCAAGAAATCGATCCTGTCTTTTGACATGCCAAAGGAAATAGAGAAAAAGAAGCAGTTTGAAAATGGCAAGATACATATGAACGATAATGGATTTAAAAACTCAACTCCCGGTTATGTGAACGGCAACGGAAAACTTCATCATTCGACGAATTTCACCGGACATTACAATGACTGGTTGAAAGGCAACAGTGTGGAGGACAATCTCATCTGTGACTATGAACTTGAACTCATGAAGGGGAAAAGCATCTTGGAAGAGTCCATGTCAGACATGACCGGCTCTCTTCTGTCACTCGAACTCGATTTAGGACCGTCCATTTTGGATGAGGTTCTAAATGTCATGGACAAACCAAAGATGTAG

Function

GO:

id name namespace
GO:0070546 L-phenylalanine aminotransferase activity molecular_function
GO:0080130 L-phenylalanine molecular_function
GO:0008793 aromatic-amino-acid molecular_function
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001828 True 867 mRNA 0.49 1 16839394 16840260

Neighbor

gene id symbol gene type direction distance location
AMCG00001829 NA coding downstream 41419 16797565 ~ 16797975 (-)
AMCG00001826 NA coding downstream 60821 16772176 ~ 16778573 (-)
AMCG00001827 fh coding downstream 106819 16724475 ~ 16732575 (-)
AMCG00001817 rgs7 coding downstream 160765 16645927 ~ 16678629 (-)
AMCG00001816 grem2,grem2b,LOC107570400,LOC107746751,LOC107659701 coding downstream 194413 16635464 ~ 16644981 (-)
AMCG00001822 NA coding upstream 59700 16899960 ~ 16905437 (-)
AMCG00001823 polr1b coding upstream 111261 16951521 ~ 16959906 (-)
AMCG00001821 ttl coding upstream 120205 16960465 ~ 16968616 (-)
AMCG00001832 NA coding upstream 137063 16977323 ~ 16990978 (-)
AMCG00001833 tmem87b,LOC107688162,LOC107597636,LOC107585411 coding upstream 171216 17011476 ~ 17020838 (-)
G160631 NA non-coding downstream 22199 16816939 ~ 16817195 (-)
G160548 ryr2,LOC107395022,LOC102799451 non-coding downstream 523831 16315327 ~ 16315563 (-)
G160538 NA non-coding downstream 603591 16234415 ~ 16235803 (-)
G160387 fbxo28,LOC106576958 non-coding downstream 1043036 15791996 ~ 15796358 (-)
G160319 NA non-coding downstream 1228678 15603843 ~ 15610716 (-)
G160640 NA non-coding upstream 14393 16854653 ~ 16854957 (-)
G160682 NA non-coding upstream 135188 16975448 ~ 16975879 (-)
G160783 NA non-coding upstream 567951 17408211 ~ 17408617 (-)
G160842 NA non-coding upstream 761821 17602081 ~ 17604562 (-)
G160903 NA non-coding upstream 1025756 17866016 ~ 17866221 (-)
AMCG00001791 fam98a other downstream 1005588 15828758 ~ 15833806 (-)
AMCG00001784 NA other downstream 1136894 15691569 ~ 15702500 (-)
G160255 NA other downstream 1318755 15504311 ~ 15520639 (-)
AMCG00001771 banf1,LOC105900308,LOC107086546,LOC106536379,LOC106576720 other downstream 1337601 15499553 ~ 15501793 (-)
AMCG00001756 NA other downstream 2268467 14550689 ~ 14570927 (-)
AMCG00001843 NA other upstream 251093 17091353 ~ 17092549 (-)
G160817 NA other upstream 690606 17530866 ~ 17531990 (-)
AMCG00001865 NA other upstream 967758 17808018 ~ 17810097 (-)
AMCG00001863 LOC105006094,LOC104951035,LOC101160874,LOC106578938 other upstream 1019879 17860139 ~ 17865379 (-)
G160925 mta3,LOC105904126,LOC106516625,LOC107749351 other upstream 1068494 17908754 ~ 17910853 (-)

Expression


Co-expression Network