AMCG00001833 (tmem87b,LOC107688162,LOC107597636,LOC107585411)


Basic Information

Item Value
gene id AMCG00001833
gene name tmem87b,LOC107688162,LOC107597636,LOC107585411
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 17011476 ~ 17020838 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001833
GAGGCAGGTGAGGCAGGTGAGGCAGGTGAGGCGGTGACGCGGCCCGGGGGCAGGTGGGCTGAGCCGCCTGCTGGTTCGCTTCCAGCTGGGAAACATGGCCGCTGCAGCGCGGTGGCGGACGCGGAGCTGCTCCTACTGGAAGCCGGATTTGGGTCTGTTGTTGCTGCTGGTCCGGACGCTCCTCTACGGCTCGGTGGCCGAAGCCGCCCCTGAGCCCGGGCAGTGGACCTTCACCATCGACAACGAGATGTACGATAAGACGTTCCTCAATCGCGGCGGCAGCCTGGATCCGAACCCTTTAGGGATCGGAGAGTTCATCGAGAACACGTACCGGGACGTGGTGTGTCACGACGAGCTGCATCTCTTTCCCATGTTAAACaagaGCAGGTCGTTACCGCGTCCCGTGTTGTCACCGTTGGCGTCGGTGGACGAGAACAAAAATGTTTCCAGATGGAGACGGAATGAATCGGGCGTTTTTCcgGAGGACGTCATTGCCACGTCGTGGAGAGACGGGCCGTATCTGTTAGTGGTTTCTTTTAAAGCACTCGGTGATAAAGTGGATTGGAACCTGACagTGCGTGTCACCATGGAAGGCAGTCACGGGTTTATATCCATCACAGAATGGCCGCTGATGATCGTGAGTTCCCCCGCCGTGTCTGGTTGTGCTGGGTTGTGTCTAGGCGAGGTGTTGTGGTTGCTCTTACAGCACGCTCTCGGTTGGTTTCAGTTCTACATGGTGATGTGCATCGTCTACATCCTGTACGGCGTGCTGTGGTTCCTGTGGTCGGCCTGCTACTGGAAGGACCTGCTGAGGATCCAGTTCTGGATCGCCGGGGTCATCTTCCTGGGGATGCTGGAGAAGGCCGTGTTCTGCGCTGAGTACCAGAACACCAACGTCATGGGCTCAGCCTGCCTCGTTTGGGAACGGTCATGCACCGAGTCGTTGGCCTCGGATCTGGCTCAAACCATAAAGACGCTGAAATTACGGAGAAACCCGGTGAAGTTATCCCTGTACAGGCACTTTACGAATACCTTGATAATTGCAATAATAGCGTCCATAGTTTTCATGATCTGGACAACAAAGAAGTTCAGGTTGGCCGAGTGTCAGTCGgACTGGATGGAGCTCTGGGTGGACGACGCCTTCTGGAGATTCCTGTTCTCCATCATACTGTTAGTGATAATGTTTCTCTGGAGGCCGTCCGTGAACAATCAGAGGTATGCGTTCACACCTCTGATGGACGACTCCGATGATGAAGAAATAGAGGAGTTCTTGGTGTCATCTAATGTGGCTGACGGTATAAAGCTGAGATCAAAAATGGAATCCAATGGGTCCGCAAGACCTGCAGCTAATCTGGATGAAGACTTGAAATGGGTCGAAGAAAACATTCCATCTTCCTTTGCAGATGTagCGATGCCTGTCCTCCTGGATTCGGATGAGGAAATCATGACAACGAAATACGAGATGTCCAAGATGGAGTGAGTTGTTTAGACTGCTGAACACGGCTGGTCACGGCTGACCAAATACGTCCCAGAAGCATGTAAGAAATAAACCTGACTGACAGAGTTCTTCAGGGATAACAAAACCGTTTTCATATGACGGACATGCTTTGcttgaaaaacaacaattttcCCTTCATCTAACTGGTTCAACTTGTCATCACTGAAATAATCTTGGGTCTGTTTTAATCTCCTCGCTTGTGTGTTAACTTTCACCGTAACCGCCGGTATTACAGGTGTTCTCTGGTGAGAATCGGACAGGGCTTCGCTGGCGTGACTTCAGCGGGTCTCCGCTTTTGGACGGAACATTCATATGCAAGTTTTTGTGCAGTTCTGCTCAAAATCCGTACAGTGAAGCTTTCTGATATTAAATTCAGCACCTGGACTTTGTGCACGTATGAATTTCTTTAAATACCAAAGTGTGACTGGTGTAAAAACCTTTATACAGGGGTGTAATTCAATGCcatattttcttctgctttccATGGCTGTATTGGAGAAAACCCCAGgcaaaaaaaatctgcatttccACACAGAcgaattttgttttttctcttgatCTATTTCTTCTACATTTTCTCCGTCTCGTTACGACCGTTTTAAGGAGCGTTGGCAACAGGACCGCCTCCTGCGCCATCGCAAAGAGCAATACATCATCGCGCCCTGCCAGGTGTACATATTTCCtctgtattaaatgttttaccttcattcttgttttaaaagtgtactTAACATCTTAATAGCCtttaagatttgttttgggGACTTTCAGTTACACGTCACCTTGAGGAATGAATTTCAAAATCGCCGAACCTTTATCTTTTTCAGTTACATGTTGGTGGTTGTCATCTTAAttcaatggaaattaaaaaaaattaataaaaaaaaaaaaatcttctggtTTCTGTGATAGAAAGTGCCTCTTGAATtccagcaaaaaagaaaaaaacaactcgATCAAGTCTCTGCGTAAGCATCGAGCGACAGGGAGATGAGTTTGGGGTCCTTGAAAGACTTCTTACGAAACAAAAGAAACGTTTGCCGCGGATGTCACAAATGTCAGCCAGGTGTGTCTGCTGGAGTAAATCTGCAgtagaaactttttttttttttttacagaattatAAATGACTCGAATATGAATGGGCtgctttatgttttaattatgtgttcTGGTTCTTTTTCACGGTTGATGAAATGGCAGCAGGAGCTCCAGAATATATGGTTTAATGTAACGTCTTTGTttgcctttgtttatttattttgtgtggcgATTGGGTTCAgacaaactttcttatgtaaacGCACAGTGagtctaaatgtttatttatgatcATCCTGACTGTTTCCtgaaaaaggttttgttttcagtattgattaactttattgtaaatatcaaataaaacggtttattttattgcaaa

Function

symbol description
tmem87b Acts upstream of or within cardiac ventricle development. Is expressed in hindbrain; pharyngeal arch; rhombomere; and somite. Orthologous to human TMEM87B (transmembrane protein 87B).

NR:

description
PREDICTED: transmembrane protein 87B isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001833 True 2921 mRNA 0.46 15 17011476 17020838

Neighbor

gene id symbol gene type direction distance location
AMCG00001832 NA coding downstream 20498 16977323 ~ 16990978 (-)
AMCG00001821 ttl coding downstream 42860 16960465 ~ 16968616 (-)
AMCG00001823 polr1b coding downstream 51570 16951521 ~ 16959906 (-)
AMCG00001822 NA coding downstream 106039 16899960 ~ 16905437 (-)
AMCG00001828 NA coding downstream 171216 16839394 ~ 16840260 (-)
AMCG00001835 NA coding upstream 2010 17022848 ~ 17041994 (-)
AMCG00001834 NA coding upstream 22880 17043718 ~ 17054044 (-)
AMCG00001844 NA coding upstream 132665 17153503 ~ 17154866 (-)
AMCG00001842 LOC106512626 coding upstream 144994 17165832 ~ 17182616 (-)
AMCG00001845 LOC107739475,LOC107565601,LOC107728072 coding upstream 195572 17216410 ~ 17233305 (-)
G160682 NA non-coding downstream 35597 16975448 ~ 16975879 (-)
G160640 NA non-coding downstream 156519 16854653 ~ 16854957 (-)
G160631 NA non-coding downstream 194281 16816939 ~ 16817195 (-)
G160548 ryr2,LOC107395022,LOC102799451 non-coding downstream 695913 16315327 ~ 16315563 (-)
G160538 NA non-coding downstream 775673 16234415 ~ 16235803 (-)
G160783 NA non-coding upstream 387373 17408211 ~ 17408617 (-)
G160842 NA non-coding upstream 581243 17602081 ~ 17604562 (-)
G160903 NA non-coding upstream 845178 17866016 ~ 17866221 (-)
G160928 NA non-coding upstream 894580 17915418 ~ 17915691 (-)
G160944 NA non-coding upstream 1017866 18038704 ~ 18039374 (-)
AMCG00001791 fam98a other downstream 1177670 15828758 ~ 15833806 (-)
AMCG00001784 NA other downstream 1308976 15691569 ~ 15702500 (-)
G160255 NA other downstream 1490837 15504311 ~ 15520639 (-)
AMCG00001771 banf1,LOC105900308,LOC107086546,LOC106536379,LOC106576720 other downstream 1509683 15499553 ~ 15501793 (-)
AMCG00001756 NA other downstream 2440549 14550689 ~ 14570927 (-)
AMCG00001843 NA other upstream 70515 17091353 ~ 17092549 (-)
G160817 NA other upstream 510028 17530866 ~ 17531990 (-)
AMCG00001865 NA other upstream 787180 17808018 ~ 17810097 (-)
AMCG00001863 LOC105006094,LOC104951035,LOC101160874,LOC106578938 other upstream 839301 17860139 ~ 17865379 (-)
G160925 mta3,LOC105904126,LOC106516625,LOC107749351 other upstream 887916 17908754 ~ 17910853 (-)

Expression


Co-expression Network