AMCG00001843


Basic Information

Item Value
gene id AMCG00001843
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 17091353 ~ 17092549 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001843
GCATCGTCTATCGATCCTCTCCGGACTCGACTGGTTTGGTCTTGCTTTGGCGCCGTCTTTGTGGCCGCAATCGATGCTCTGTGCGCTCGGCTGGTCGCGCCTGGCTGTTTGGCGCGGTCTGGGCTGCAGTCGGGCGGCTGTTCCTGCATTTCTGATAATAAAgaggagctgcaggCTTTGCGGCAGATGCGCTGCTCTCTGCGCGCAGTTGAGCACATGGCGGTTTGCTTGAACCAGAACATCCAGCTGGCCATTAAAAACCGGGATAGAGTTGCAGaattaaataaagGCTGGCAGATTTTCTTCTCGGGGCAGAAATGATTGATGGGCAGAACAGGACGACTGACACCAGCTGTGCGggatttttcattatttttcatcatgTCAAAGAGTGCAAAACTTATTTTCTAGTTTAACTGTGCAATTGTTTGTAAGAACGTGAATAATACCACTCCTAATAATGCcaagtttatttgtatataaaaactttttacacatttaattgtattatgaaaTAAAGTACAGTTACATTA
>TU202328
CTGGCTGTTTGGCGCGGTCTGGGCTGCAGTCGGGCGGCTGTTCCTGCATTTCTGATAATAAAGTAAAAGCGTAAAGTAGCCGCTcaccctccacacacacagggtgCCATGTCCGGGGCTCGGCCCAGTCGCGGTGCTGCAGTGGGCCAGGCTGACGGCCAGCTGgaagagctgcaggaggagctgcaggCTTTGCGGCAGATGCGCTGCTCTCTGCGCGCAGTTGAGCACATGGCGGTTTGCTTGAACCAGAACATCCAGCTGGCCATTAAAAACCGGGATAGAGTTGCAGaattaaataaagGCTGGCAGATTTTCTTCTCGGGGCAGAAATGATTGATGGGCAGAACAGGACGACTGACACCAGCTGTGCGggatttttcattatttttcatcatgTCAAAGAGTGCAAAACTTATTTTCTAGTTTAACTGTGCAATTGTTTGTAAGAACGTGAATAATACCACTCCTAATAATGCcaag

Function

GO:

id name namespace
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001843 True 533 mRNA 0.46 4 17091353 17092549
TU202328 False 483 TUCP 0.51 4 17091418 17092449

Neighbor

gene id symbol gene type direction distance location
AMCG00001834 NA coding downstream 37309 17043718 ~ 17054044 (-)
AMCG00001835 NA coding downstream 49359 17022848 ~ 17041994 (-)
AMCG00001833 tmem87b,LOC107688162,LOC107597636,LOC107585411 coding downstream 70515 17011476 ~ 17020838 (-)
AMCG00001832 NA coding downstream 100375 16977323 ~ 16990978 (-)
AMCG00001821 ttl coding downstream 122737 16960465 ~ 16968616 (-)
AMCG00001844 NA coding upstream 60954 17153503 ~ 17154866 (-)
AMCG00001842 LOC106512626 coding upstream 73283 17165832 ~ 17182616 (-)
AMCG00001845 LOC107739475,LOC107565601,LOC107728072 coding upstream 123861 17216410 ~ 17233305 (-)
AMCG00001855 NA coding upstream 481111 17573660 ~ 17580861 (-)
AMCG00001857 NA coding upstream 490908 17583457 ~ 17584485 (-)
G160682 NA non-coding downstream 115474 16975448 ~ 16975879 (-)
G160640 NA non-coding downstream 236396 16854653 ~ 16854957 (-)
G160631 NA non-coding downstream 274158 16816939 ~ 16817195 (-)
G160548 ryr2,LOC107395022,LOC102799451 non-coding downstream 775790 16315327 ~ 16315563 (-)
G160538 NA non-coding downstream 855550 16234415 ~ 16235803 (-)
G160783 NA non-coding upstream 315662 17408211 ~ 17408617 (-)
G160842 NA non-coding upstream 509532 17602081 ~ 17604562 (-)
G160903 NA non-coding upstream 773467 17866016 ~ 17866221 (-)
G160928 NA non-coding upstream 822869 17915418 ~ 17915691 (-)
G160944 NA non-coding upstream 946155 18038704 ~ 18039374 (-)
AMCG00001791 fam98a other downstream 1257547 15828758 ~ 15833806 (-)
AMCG00001784 NA other downstream 1388853 15691569 ~ 15702500 (-)
G160255 NA other downstream 1570714 15504311 ~ 15520639 (-)
AMCG00001771 banf1,LOC105900308,LOC107086546,LOC106536379,LOC106576720 other downstream 1589560 15499553 ~ 15501793 (-)
AMCG00001756 NA other downstream 2520426 14550689 ~ 14570927 (-)
G160817 NA other upstream 438317 17530866 ~ 17531990 (-)
AMCG00001865 NA other upstream 715469 17808018 ~ 17810097 (-)
AMCG00001863 LOC105006094,LOC104951035,LOC101160874,LOC106578938 other upstream 767590 17860139 ~ 17865379 (-)
G160925 mta3,LOC105904126,LOC106516625,LOC107749351 other upstream 816205 17908754 ~ 17910853 (-)
G161153 NA other upstream 1743233 18835782 ~ 18850884 (-)

Expression


Co-expression Network