Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00001846 |
| gene name | NA |
| gene type | misc |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030143.1 |
| NCBI id | CM030143.1 |
| chromosome length | 20516281 |
| location | 17417351 ~ 17462934 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0042981 | regulation of apoptotic process | biological_process |
| GO:0009266 | response to temperature stimulus | biological_process |
| GO:0006979 | response to oxidative stress | biological_process |
| GO:0006120 | mitochondrial electron transport, NADH to ubiquinone | biological_process |
| GO:0051865 | protein autoubiquitination | biological_process |
| GO:0044444 | obsolete cytoplasmic part | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016881 | acid-amino acid ligase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00001846 | False | 237 | mRNA | 0.72 | 2 | 17445932 | 17446842 |
| TU202413 | True | 494 | TUCP | 0.65 | 3 | 17417351 | 17462934 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00001840 | NA | coding | upstream | 237938 | 17177215 ~ 17179413 (+) |
| AMCG00001838 | pde10a | coding | upstream | 256560 | 17144241 ~ 17160791 (+) |
| AMCG00001839 | t,LOC102777203 | coding | upstream | 319018 | 17094564 ~ 17098333 (+) |
| AMCG00001837 | NA | coding | upstream | 324753 | 17074216 ~ 17092598 (+) |
| AMCG00001836 | NA | coding | upstream | 346693 | 17069882 ~ 17070658 (+) |
| AMCG00001856 | park2 | coding | downstream | 55770 | 17518704 ~ 17520528 (+) |
| AMCG00001853 | NA | coding | downstream | 64807 | 17527741 ~ 17531215 (+) |
| AMCG00001854 | NA | coding | downstream | 69517 | 17532451 ~ 17543361 (+) |
| AMCG00001852 | ubr2 | coding | downstream | 80818 | 17543752 ~ 17568195 (+) |
| AMCG00001847 | NA | coding | downstream | 132399 | 17595333 ~ 17601349 (+) |
| G160782 | NA | non-coding | upstream | 8735 | 17408257 ~ 17408616 (+) |
| G160649 | NA | non-coding | upstream | 507318 | 16905249 ~ 16910033 (+) |
| G160648 | NA | non-coding | upstream | 514911 | 16899895 ~ 16902440 (+) |
| G160542 | tubb4b,LOC106575097,LOC105893757 | non-coding | upstream | 1139297 | 16276806 ~ 16278054 (+) |
| G160464 | NA | non-coding | upstream | 1298085 | 16117205 ~ 16119266 (+) |
| G160869 | NA | non-coding | downstream | 335265 | 17798199 ~ 17804178 (+) |
| G160895 | NA | non-coding | downstream | 397228 | 17860162 ~ 17861427 (+) |
| G160910 | NA | non-coding | downstream | 453861 | 17916795 ~ 17917054 (+) |
| G160939 | NA | non-coding | downstream | 561262 | 18024196 ~ 18029816 (+) |
| G160943 | NA | non-coding | downstream | 575770 | 18038704 ~ 18039374 (+) |
| AMCG00001841 | NA | other | upstream | 234750 | 17179594 ~ 17182601 (+) |
| AMCG00001814 | ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 | other | upstream | 1039491 | 16237262 ~ 16377860 (+) |
| AMCG00001762 | NA | other | upstream | 1978320 | 15432337 ~ 15439031 (+) |
| AMCG00001760 | mpc1,LOC107725004,LOC106589821,LOC107693783 | other | upstream | 2082771 | 15331620 ~ 15334580 (+) |
| G160026 | NA | other | upstream | 3147161 | 14269615 ~ 14270190 (+) |
| AMCG00001881 | NA | other | downstream | 724968 | 18187902 ~ 18209391 (+) |
| AMCG00001883 | NA | other | downstream | 747075 | 18210009 ~ 18217138 (+) |
| AMCG00001880 | NA | other | downstream | 1201061 | 18663995 ~ 18673815 (+) |
| AMCG00001889 | cript,LOC107582781,LOC107728714 | other | downstream | 1436403 | 18899337 ~ 18901718 (+) |
