AMCG00001847


Basic Information

Item Value
gene id AMCG00001847
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 17595333 ~ 17601349 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001847
GGTTCTCCGAGTCTCTGCACAGTTCTAGGTGGACAAAGTGATCTGGAGGTATTCCCCTGGTCTTGTGGTTTGTGTCACATGTTTGCGTAGCGTATGACTTATAGATGGATTGCATACTAGGGAATTTGGTGTTGGATGCTGTTTTTTCCCTCCCACCTCCGATGGCAGATATTCTACTGTGAACCTTATGTGTTGTGTTGAAACTCCCTTCTCTCTCCACACAGGAACTTAAAGGCGTTAAATGATTGTCTCCATGGTCTTCGCCGGAAATCATTGTCATGGATGACGAAGAGGACCGCCGTCTTCTAGATATCATAGGGGACGTGCAGGCATTAAATGATTATCTCCATGGGTCGAACAACAAATCGATTGATGAAGATGACCTGAACAACGCTGCGTTCGGCTCAGTCAGCTACCTCTTTGCCAACGCCTCTAGCGTGGACCCCGGCTCCAGCCTCAAGGATGTGAGTAACCACCTGGGGGACTCTGGTGGAGGGGGGCTCCAGCTGTCCAACAGCCTGCAGTTCATCGAAGAGGAGCTGGGGGGTGGCTCTCCCTCGGTGGGGGAGCTGGGGGAGGAGCAACCCTTCGACATCCTGCAAAAGTCCCTGCAGGAGGCGGACATCACGGAGCAGACCCTGGCCCAGGAGGCGCTGCTGGAGTCCTCGTCCCCGGCGCTGGGCCTGGCCGGCCAGCCCTTCTCCCAGCAGCAGGTGGTTTCCAACTCCAACTTCGGGGCCATGGGACTCTCCCACCTACCCGTCCTCCAGCCGCCGGCCGGGGGCCACTTCCCTGGCATGCAGCCCCACAGCTTCATCCACCAGGTCCACACGCAGCACCTGCACAATGGCAGCCCAGCCGGCCACATCCAGCTGGTGGGCTCCTTCAACGCCCAGCCCTCCATGATGACCATCAACAACCTGGACCGCTCCCAGATCCTGCTGAAGCCGGGGCAGGCATCCTCTCCGGGGATGGGTGGGGGTCTGCTGGTGCAGAGGCAGCAGGGCCACACTGCCGGCGGCGGACCCCTCTTCAGCAGCTCCCCTGGGGGCCAGGTGTCCATGCCCTTCATCATCCAGAGAGGCCCCTCCTCTCAGCCTCTGGGCGCCATGAACCAGAGCCTGAAGGGCCCCGTCAGTATCCAGCCCAAGCCCATCCAGGTGGGCCCTCAGACAGTCTACAACATCAGCAGCCTGGGGCTTCAGCAGCAGGCTCCTCAGCACCAGGGGCAGCAGGGCAGCCCCTACGCCGCGGCCGGCTCTCCACAGGCCGGTCAGCAGCCGCAGCAGATGACCGTCAACATAGTGAACCAGCCAGGCCTGCGGAAGCCCACGCCGGGGCACCAAGTGGTCAACCACTCCGGCAGCATCGTCATCCACTCCCCCATGCAGCACCAGCAGCCCTTGCACCTGCCCCAGAACCAGTTCCTGCTGCCCACCTCCCTGTCCCTCAcccccagctcctcctccacacACGGCATCCCGGCGCTGAACGGGCAGGTGCTGCACACCCAGTCAGCACAGATCGACCAGGCCTTCGGCAACAGGACTTCGGCCAACTCCCCCTACTCGGGGCCCATCCTGGCCAACCAGAACACGGCTGTGCAGCTGGTCGCTGGGCAGAACTTCGCTGCCCCTGGAGGGCAGCTGATCGTCAATCAGGGGGTGGTGGGCAGCCAGCTACAGCAGGGCCCCCCCACGGTGGTGCACCTGGCCGCCCCCCACGGGAACATGCCCAACACCAGGACAGGTTTCCCTGTGACCACACAGGCCGGGGGCACTATGGTTCCGGGCATGCAGGTCCAGAACCGACTGGCTGTTATTAACTCTACGGGCTCGGTGCACCCAGGGTACGTGGCTCAGACACAACAAGTGAGCGCCCAGCAGAGCcttcagcaacaacaacaacaacaacaacaacaacaacaacaacaacaggccCAGGTCCGACAGCAGGTTCCTGTCAACATGGGCCACCGATTCTTCGTCCCCGTGTCGCAGGAAGCAGGAAGTTCCCAGCTTCTGGGGAGTCAAGGCACTCAGCACCAGCAGTTTGAGACGCAGCAGTTTGCGCAGAATCAGATGCAGCAGGACTCGGTGGCTCAGACGACGTCGGGACTCGTCTCGAAGCTGCAGGATGGACTGAGACAACCTCAGCTGGCGAACCTGCTGGCGAGCAAAGCTGGCAAAGCTTCGAGCGCAGCTTCGGGCTTGGATGGATTAGTCCACCTCCCAAATAATGCAGGGGTCCAGTCTCCACATCAGCAACACACACAGaagtGAAaTCTTTCTTGCACAGAAGAGACCAGCTACTCAGCAACTGACAAAAGGAAACCTAATCCTCCAGCAGCTACAGAAGGACCAGTTGGATGTCCAGGTGGCCGATAAGTCCTCGTTCTCCTCTCTGGACGACGCCATCCACAAACTGCTGCCCTACCACGTGTACCAGGGCGCGCTGCCCTCCGACGAGGACTTCAACAGAGTGGACGACGAGTTCGAGGTGGTGGCGACGCAGGTGCTGAAGCGCACGCAGGCCATGCTCAACAAGTACCGGCGGCTGCTGTTCGTGGAGGCCAAGcGGATGAGTCCCTCTTCGGAGATGGTGATGATCGACAGGACTTTTAATCAGGAAGAAAGAGCCAATCTAACTCAGGACAAGCGGCTGGCACTCATGGATCCAGaTGGTTTTCTGGAGGACTTCTGTTGCTTGGCCAAACCCACGGGACCGACCGCGGAGTCAGCAGCCCCCTCCCCTGCAAAGAGGACTGAGAAACCGGGAGGGTCTTCTCCGAGCCATGCTTCGGGGGCACCGGATACTCGGGGGGGACCTGAGCGGAGGGCAGGCGGTCCACTGCGGGAGCAGCACAGCGAAGGGGCCGAGACGGGCCGGGCGGGCATGGCTCCACATGCACTGTCACCATGCCAGTCGGGGGCCGGTACGGAGACCGCCAGGCGGGGGCCCATGCCGGCGAGGGCCAACGTGGATCCCACCACCATCACGAGAGACTCGCAGCCGGCCTCGTCCTCCCCCGGCGGCAAGGACAGTGGGGGGGAGGCTCCGCAGCAGGAGGTGTCCCTCAGCGAACACCTGGAGACTGCGATCAAGAGCATCCTGGACTTGAAGAAGACGCAGAAATGCTCGctcaatagtaataataacaataacggcggcggcggcagcatagtcccgccccctcccccagctCCCACGCCGCACGGCAGCAGCGCTCCGCCACCCACCCTCCCCACTGCCTCACACCCAGGGCGGGGTCTGGAGAAGCCCCTCCGCTCGGAGCCCAGCCAGGCGCCGCCGGCCGACACGGACTCGGTCCTCGAAGCCGCTGTAAATAGCATTCTAGAATGTTAGGTGGTGCCACGCTTTCCTTTCAGTTCCTGTTTTTATAGagaagttattttgtttgtcaaaaCCCTGCCTCCGCCGCCCCCTGAGGCGAGGGATGGAGAGCGGAGAGGCTGCG

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001847 True 3478 mRNA 0.61 13 17595333 17601349

Neighbor

gene id symbol gene type direction distance location
AMCG00001852 ubr2 coding upstream 27138 17543752 ~ 17568195 (+)
AMCG00001854 NA coding upstream 51972 17532451 ~ 17543361 (+)
AMCG00001853 NA coding upstream 64118 17527741 ~ 17531215 (+)
AMCG00001856 park2 coding upstream 74805 17518704 ~ 17520528 (+)
AMCG00001840 NA coding upstream 415920 17177215 ~ 17179413 (+)
AMCG00001851 NA coding downstream 69190 17670539 ~ 17670922 (+)
AMCG00001849 NA coding downstream 69717 17671066 ~ 17672381 (+)
AMCG00001850 pkdcc,pkdcca,LOC106576746 coding downstream 82754 17684103 ~ 17686272 (+)
AMCG00001848 NA coding downstream 89520 17690869 ~ 17694329 (+)
AMCG00001862 NA coding downstream 165312 17766661 ~ 17769109 (+)
G160782 NA non-coding upstream 186717 17408257 ~ 17408616 (+)
G160649 NA non-coding upstream 685300 16905249 ~ 16910033 (+)
G160648 NA non-coding upstream 692893 16899895 ~ 16902440 (+)
G160542 tubb4b,LOC106575097,LOC105893757 non-coding upstream 1317279 16276806 ~ 16278054 (+)
G160464 NA non-coding upstream 1476067 16117205 ~ 16119266 (+)
G160869 NA non-coding downstream 196850 17798199 ~ 17804178 (+)
G160895 NA non-coding downstream 258813 17860162 ~ 17861427 (+)
G160910 NA non-coding downstream 315446 17916795 ~ 17917054 (+)
G160939 NA non-coding downstream 422847 18024196 ~ 18029816 (+)
G160943 NA non-coding downstream 437355 18038704 ~ 18039374 (+)
AMCG00001846 NA other upstream 132399 17417351 ~ 17462934 (+)
AMCG00001841 NA other upstream 412732 17179594 ~ 17182601 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other upstream 1217473 16237262 ~ 16377860 (+)
AMCG00001762 NA other upstream 2156302 15432337 ~ 15439031 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other upstream 2260753 15331620 ~ 15334580 (+)
AMCG00001881 NA other downstream 586553 18187902 ~ 18209391 (+)
AMCG00001883 NA other downstream 608660 18210009 ~ 18217138 (+)
AMCG00001880 NA other downstream 1062646 18663995 ~ 18673815 (+)
AMCG00001889 cript,LOC107582781,LOC107728714 other downstream 1297988 18899337 ~ 18901718 (+)

Expression


Co-expression Network