AMCG00001848


Basic Information

Item Value
gene id AMCG00001848
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 17690869 ~ 17694329 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001848
ATGGTGACTGCAGCGACACCAGTGGGATCCCATCCATGCTCACGTTTACAAAGTGTTCAGGGATACAAACGTGTGATTGATACTGCCATCGCCGGGGAGAACTACCGCTGCTGGCCGTCCTATCAGCACGAGGGCTGCCTGCTGTCAGTCTTCAGTCTCCGAGAGGCCattggtgtgtgtgagagccACGCCCAGTGCCGGGCCTTTGTGATGACCAATCAGACCACGTGGACGGGAATCTGCCGCGTCAGGACTGCCCTCTGTTTCCGGCACACATGCGAGGGTGTGAGGAGAAGGCTCGGCCCGGTGTCTGTGGTGCTGTCACCAGCTGGTGTTCTTCAAGACCGGCTCAGCCAGCCTCGTGCCAGCACCGGGGAGGGTGACCTACCTGAAAGTGTCCGGCTGAGGACAGGGCAGCCTGGCCCGGAAAACGAGAAACAGGGGCCGGAAGATGCCCCAGGACTGCCTACCCGCTGTCTGGGACGCAGCCCCCCAGAGACGGAGAGACGGAGGGACGGAGAGAAGTGAGCAGAGAAAGGAGGAGACCTACACTCGCACTGTTGTCCAACGTGCCCGTCTCCGGCGTCTGCACGAGCAGGACCTGAACCAAAAGACCCCTGGCTAATGTGCAATACCGCCAATCGGAAAATGTGACTGTTATTCTATTTTCtgttattgtgattgatttTGTTGTAATTACGTTCTTTCAGAGCCGTCTGTTTTTGAAGTGGTGTTGTCCAACGTACGGAGTTGTGAGCCTCCCGGTCCGCGGTGTGTGGCGTCCGAGAGTTGTGTTGTCTTCTGGCGAATGGAGCCGCATTGATGCTGGGAATTCTGGGAAGGGTTACAGAAGCTCAGTATATAAATGGGAGTCCCATCTGCATCTCTAGCCATTCTCAAgcacttattttgtttacatgaagTCGGACGTTACATAATGGTGACCTTTCtctgaatgtttgtttgtaaatctGTCTTCCTGTGCTGTGAACCTTCGATCTCAAGGACTGGGACCGTGCGCAACTTATTACCGCAGCTGCCATCTTCTTCCACCGCTGTCTTTGACCTTTTCACCCCAAATACATCCGAACTTGATTTTCTCTCAAAGAAGGCTCACGTGCAAAGCCTGCCAAACCGTACATCGTGACGGAGATGATCTGACACAGGAGGCTGGTGATGTAACCATTCCGCTGGAGCCGTTATAAATACCACAGAACAATGACGTTTGTTTCTGAAATTCAGGCATTAAAGAAACTAGTGTCGgtggctttaaaatgtatttccggTGCTTTGAGGTTATCATGTTATTGATGCCAAATGAAACACGGGGCTCCCAAGCCTTCAACGCAAGAGCTGTTTaaggatttttaaaatacatgttcaatTCAATTAGTTAGTTCAATTAGCAAGATTCTGCAACAGGCTTGTGAATAAGAGCTGTTCTTCAATATAGAGCAGACCTTGAAAACaacttgtcttttttgttttcttgttttcatgcATCAAGATGTTTTCAGTcttattttcaatattgttttaagagGGTAATGATTCTCACGGGACTTGTGTCAAATGTTGTTTAGGCTTCTTCACCAAatagtgttttgtttctatgcATTTCTGCTTCACAATACTTGTAACTCTGAGAGGAattgggagtttgttcagagCGCTGTACAGCTTGACTCCTGCCTTTCAGTTCACTGTGCAGAGAATGTGCTCAATTGTGAAGAAAAGGAAGGGTTAACTCCTTCGTGTATCACCTGTCAGACCTGTCTGAGATGTTTTTTCAGGCAGCTTCCCTTGTTATAGTGTTCTCTACAACCGACCAGGTTACGAGAGGACAAATTACAGATTTAGGTTTCCCAAGGAAATTAAAACTGTCCATTCGACCAGGCGATGGATGTGGTCAGGAGTTCTTGCTTTCAGTGAAAGCACcgaagcaaaaataaataaaacaagaagcataaattaaatgtcatcgcattttttgtttgttttcctttgttgcTTGCAATACTATTTGctgtacataattaaaaatgtgaataatgatgagaaattgtttatttttgtatggaaaaaat

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001848 True 2087 mRNA 0.47 4 17690869 17694329

Neighbor

gene id symbol gene type direction distance location
AMCG00001850 pkdcc,pkdcca,LOC106576746 coding upstream 4597 17684103 ~ 17686272 (+)
AMCG00001849 NA coding upstream 18488 17671066 ~ 17672381 (+)
AMCG00001851 NA coding upstream 19947 17670539 ~ 17670922 (+)
AMCG00001847 NA coding upstream 89520 17595333 ~ 17601349 (+)
AMCG00001852 ubr2 coding upstream 122674 17543752 ~ 17568195 (+)
AMCG00001862 NA coding downstream 72332 17766661 ~ 17769109 (+)
AMCG00001858 NA coding downstream 78986 17773315 ~ 17778699 (+)
AMCG00001859 eml4,LOC107698167,LOC107590012,LOC107695036,LOC107739484 coding downstream 89520 17783849 ~ 17786898 (+)
AMCG00001861 NA coding downstream 93417 17787746 ~ 17788787 (+)
AMCG00001860 NA coding downstream 100412 17794741 ~ 17799353 (+)
G160782 NA non-coding upstream 282253 17408257 ~ 17408616 (+)
G160649 NA non-coding upstream 780836 16905249 ~ 16910033 (+)
G160648 NA non-coding upstream 788429 16899895 ~ 16902440 (+)
G160542 tubb4b,LOC106575097,LOC105893757 non-coding upstream 1412815 16276806 ~ 16278054 (+)
G160464 NA non-coding upstream 1571603 16117205 ~ 16119266 (+)
G160869 NA non-coding downstream 103870 17798199 ~ 17804178 (+)
G160895 NA non-coding downstream 165833 17860162 ~ 17861427 (+)
G160910 NA non-coding downstream 222466 17916795 ~ 17917054 (+)
G160939 NA non-coding downstream 329867 18024196 ~ 18029816 (+)
G160943 NA non-coding downstream 344375 18038704 ~ 18039374 (+)
AMCG00001846 NA other upstream 227935 17417351 ~ 17462934 (+)
AMCG00001841 NA other upstream 508268 17179594 ~ 17182601 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other upstream 1313009 16237262 ~ 16377860 (+)
AMCG00001762 NA other upstream 2251838 15432337 ~ 15439031 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other upstream 2356289 15331620 ~ 15334580 (+)
AMCG00001881 NA other downstream 493573 18187902 ~ 18209391 (+)
AMCG00001883 NA other downstream 515680 18210009 ~ 18217138 (+)
AMCG00001880 NA other downstream 969666 18663995 ~ 18673815 (+)
AMCG00001889 cript,LOC107582781,LOC107728714 other downstream 1205008 18899337 ~ 18901718 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000005_04073488_04107874 PKDCCA coding CI01000005 null 4073488 ~ 4107874 (+)