AMCG00001866 (LOC107582777,LOC108273982,LOC107698822)


Basic Information

Item Value
gene id AMCG00001866
gene name LOC107582777,LOC108273982,LOC107698822
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 17885198 ~ 17931279 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001866
GCCCCGCACGGACACGCGTGGGGTCCCGCACGTCTGCGCGTCTGCGCGTCTGCGCCCCCGCCTGCTCTGCGCCTCTGCGTCGCGCCAGGAGGGCAGCAATGGCGGCCAACATGTACCGGGTCGGAGATTATGTCTTCTTTGAGAACTCCTCCAGCAACCCATATCTGATCAGACGAATCGAGGAGCTAAACAAGACGGCGAGTGGCAACGTGGAGGCGAAGGTCGTCTGCTTCTACCGGCGGAGAGACATCTCCAACAGCCTGATACAGCTGGCAGACAAGCATGCAAAGGAGCTCGATGAGGAGAAGGAGAGCCCCAGCGAGCCGGATCTCAGTGACAAGCAGAAGCACCAGCTGCGACACAGAGAGCTGTTCCTGTCCCGCCAGTATGAGTCGCTGCCGGCCACACACATCAGGGGGAAGTGCAGCGTGGCGCTCCTGAACGAGACCGAGTCGGTGCTGTCTTATCTGGAGAAAGAGGACACCTTCTTCTACTCGCTGGTGTACGACCCCACGCAGAAGACCCTGCTGGCAGACAAGGGGGAGATCCGTGTAGGACCCCGCTTTCAGGCCGACGTCCCCGACATGCTGCAGGAGGGGGAGCCGGACGAGAGGGACCAGTCCAAACTGGAGGTGAAGATGTGGGACCCGCACTGCCCGCTCACCAACCGGCAGATAGACCAGTTCCTGGTGGTGGCAAGGGCGGTGGGGACATTCGCACGGGCCCTGGACTGCAGCAGCTCCGTCAGACAGCCCAGCCTGCACATGAGCGCCGCTGCCGCCTCCCGTGACATCACACTGTTCCACGCCATGGACACGCTGCACCGGCATGGCTACGACCTGTCCAGTGCCATCAGCGTGCTGGTGCCGCAGGGCGGGCCGGTGCTGTGCCGGGACGAGATGGAGGAGTGGAGCGCCTCTGAGGCCAACCTGTTCGAGGAGGCGCTGGAGAAGTACGGCAAGGACTTCAATGACATCCGGCAGGACTTTCTTCCCTGGAAGTCCCTCACAAGTATCATAGAGTATTACTACATGTGGAAAACGACAGACAGATACGTGCAGCAGAAGCGACTCAAGGCAGCAGAGGCCGAAAGCAAGCTGAAACAAGTCTACATCCCCACATACAACAAGCCGAACCCGAACCAGATCTCGGTGAGCAACGGGAAAATGGCCACCGTGAATGGTGTGGCTGGAGTGGCCAACTTCCAGCCCCCTGGCCTGGGCCGGGCCTGCGAGAGCTGCTTCTCCATGCAGTCGCCGCAGTGGTACTCCTGGGGCCCCCCCAACATGCAGTGCCGGCTGTGCGTGTCCTGCTGGCTGTACTGGAAGAAGTACGGGGGTCTGAAGATGCCCAGCCGAGCAGAGGGTGAGGAGAAGATGTCCCCCAGCCCGGCCCCCACCGAGCCCCGGTCTCGGGGCCACGGTCCCCGGCAGTCGGCCTACGCGGTGCCGGTGCGGAACAGCGGCAGCCCCAAGTCCTCCATGAAGACGAGGCAGGCCTTCCTCCTGCAGGCCACGCGGCTTACCAAGCTGGCCCGACACATGTGCCGTGACCTCATCCGGCTGCGCCAGGCCGCGCGCCGCCCCTTTGTGCCCATTAACTGTGCTGCCGTGAAGGCAGAGTACATGAGCCGACTTCCTGAAGGAGCCGAGAGACCTGCCCGGATGAAAGCCTCTCAGAGGGGCACTCTCTCCAGCGTGCTCAAGTACCTAGAGTCCCGGCCGCCCCCCCACAGCCCCAGAGGCTCGCGGCCCCTCAGCCTGCAGTGCCAGCCCCCGAAACGccttctctcctccctgccCAGCCACGGGCCACTCGGCATGCTGGGAAAACGCAGCTACAACCACCACAGCAGGACGGAGGGGCTGGACAGCAGGGGGAGCATCGGCGGGCAAGATAACTCCATCCACGTCGTGGGACCCGTCTTGCACAACGGCCGGGCCGCCGGCAGCGCCCTCCGAGCCCCCGGGACGATGCTGCGCAAACGGAGGCCCAACTGGATCAATGCCCCCGACGACGGCTTCTTCCTGGTTTCCCAGGAGACCAGGAGAGTTCGGAAGCTGCTCTCCAGGCCTCAGCTAAGAAGAGCGTGTAGGCAGCCCTGCGAGCAGATCCGAGTGCGCCGGCCCCTGCACTGCCCTTCCTACCCCGGCCTGAGGACCCGCGGGCCCATCGTCATCCACGACTGAAGCTCCCTCTCCGCCCCACTGCCCTCCCCATGGCACTGCCGCCTCCCACTCTGCCACCCTCCTTTGGCATCACCCCTCGCCTCCACGCCAGATCCCCGAACCAGCAGGGCAGTTTCCGGCGCTGACCGGTGCCCGTTCCCTCTCACAGCTAGTGCGCAGGCATCTCACCACGGAGTAGACTGTTTAGTAAATCACTAGCGGCACCGGCTACGAAATACAGCCTACCTGTTTGAAGTGGCAATAAGTTAACGCTCAGTGCCTCTGAATTTTGGCCATTTCTTTCTGAAAAATGGCAAAAGGACCCAGTATGAACAGCTTGTCTATATTTCTAAAAGATCCCCCTCCCAGTGTTGGAGTGGGGgaactgtttttctgttttgctttggttttagttttggaTCTGTTTGTTAGTTTCATTTCCCTGCAAGAGCAAAGGACTGTAAATATATGTGAGCACTTGTCTGATGTATTTTCTAAAAGTACTCGTTCTCTTTTTGATATCTTTCCCTAAGGGGGTGAGAGCTCCGCGGCTCCCGGGTTTCACGGAGCCGTACGTGTTTTGTATTTGACGACACATTTCTAGTTTATACCACTGACAATCAATCTTAGAGTGTGTTGACCACCTAAACCGTGTCGAGAGACCGCCAAGAGGAGTCTTGCGCTTCACGTCCTTAGGAAAGCGGGACTGACAGCTTTCTCTCGCTGTCGCCTCGCTTATCTATGCAGACAATCTTGTTCAGTGTCGGCGGGCGACTGAGCCAAGACGCGTTTCCTCTGCGGTCAGGCCCCTCCGAACGCTGCTTCAGAGTACCGAGGCAGATATTTTGAGCCTGACTCAGCACAGTCCTCTTCCTGTTCTCTGTAGTTCGTGTCACAAATAAGCTACTTTTTGATAGTTCAAAGGGGTCAGAATAAAAggaattgtttgtatttaagtgGAGTTTACCGATTCAGCCTCGTTCTATCAATTATCGTTCGCCAGACGTGTGTAAGTTTGATTCGGATTAAACTGACGTCCTCGTGCATTAATTAGGctttaacccccccccacaacatGCATAGCATAGTATgatatttcacaattttataAGCAGAATCTTTAAAACTCCACCTCAGAGTTAACTATGCACCCAACCCGGCAACAATGGCAACTGCCAGAGAAAACAGTCCCGATTTCTTGACATTTCTACCACAACAGACCGTGCATGACCTGTGAGTCGATTCATGTCCAGTGTAGCTCTTTCTAGCTGTCCTTTATGTTGTGTAGCAGGGTATAGTTGTCGATGTGCTTTTAGAGTAGTGATGAAGGGTGGGGGAATCTGTTTTTTCTGGACACTTATCTCCTGAGTTGCCACTGCCATAGGTATATGTGGTACGACTCAGTGTTCATGTTTTACACAATACTGGTTGAACTGAATCCCCATTCCTGGCAGGTTGTGATGCTCAGATTTGCTTTTCACCTGTAAGCGTGTGATGCACTTGCTTTATTGAACTCTGTGTGACAAAGTGCGACCCGTCTCGccctttaaaatgttctgaGAAATGACACGAGAAATTAGATGGCGGTTAAAAAATGAGGCACTAACATGCGTGTAAACGGTGCAATGTTAGTGGCGTTGACAGAATGTGTTGTGAGGTCATCAGATATGACGGCATCTTTTCTGTCATGCGGCGCTTTTCCCGTTGACGCTCGCCTCTCGATTTAGCGTCTGGCTGTCGTGATTTGCCAGGCCGGGGTTAGGAATCCTCCAGTAACAGACCGCTAACGAGGCTCCAAACACTAGAAAATgactccttaaaaaaaaaaaaaatgttgtcgaCATTGAGTTTTTTGCAGAAGTCCGTTTCGATGGTTGACTCCCTTGctgttgttgtgctgtgtggCTCTCCACGGGCTCACAAACTGAAGATGCTCTCCTTTGGAAACCCCGATCCCTGGCCCCAGAGGAGCTTTACTGAGGGCAGGGATGTCTTATAGACTCCATTCACAATTTCAGtttggggtttttttttttagggggaGGATGTTAAATTCATGTGCATCAATCCAAGGTTACAGACTTAACCATTCATGTGATCAGATCGTTATGATTAGTATTGTAGTTTGTAGCAAAATGTGTgtcaaattacaataaaaaatggcaactcatatttttaagaaatgaagCTCTAAAGCCATaaactaatgtatttattttagtgtttgtttattctaaGGTTTATCATGTGTAATCAGAGGAATGTATCATGAGGACTTTTACAGTGTGCCCCTTTGCAGCATGTGATTTctgaattcattcattttatttactttataatcAGTTCCTCATGAACGCATGTGTAAGATCTGAACTGCGATTCTGAGTTCATCTCAACAATCTGTGGAGCCTAAAGGTCGATAAACCTTGCCTACAGACCGCTGAGTGACACCGTCGATCTTGTCGAGTCGAACCGAATCACGACGACTCGCGTTCTCCTTCTTTCGCGTCAACTCAGAGGGTCCGACGTTCGCCCAACACCTTCTGAATGAACCGATCGACCCCCTTCATTTTAAAACGCATGAATCAGTACTAACACCttatatttatgttgtgttttcctGTCGGTCAAAGATGTTCaatgaaatatgcaaaaataacaataaaaggaCGATACAACCAATGCAGCGGAAATCTGTGACTTGCAAACCAATTCTTCGCATGTATATACAATCATGGTCTCATTTTCCCAGGTTTCATTCACAGACGACTCGgaacatgtgtttctgtttgtcagcattgcagattttatttgactttttgtgATTAAAAGAAACCTATGTACAACATTTCTGCGTCTTCATAGTTTTGTAACAATTACTGGCAGCACAGAGAAACCTTTCTCTTTCTGGTTGATAGTTAAGCTAATAATACACACCAGTGCTTTTATTATGAACAACATGTAAAAACCCCTCCCACTGCTGTtgagaaatatgcaaaaaaaaatgcctAGTTTGCGGTTTCTATAGTAAGACTGTTGATACGCTGTTGTTTCCCGAGCTCtgagttgtgtgtctgtgggtttcCTCTCGGTTGCTGTATTGCGTTGAGTTGAACTGTGTTGCCAAGTTACAGCCCAGGAAGGAACGTAAAATTATAATTTCGACAATAACAGAGGCTGCTGCTTGAGGGTGTTCTCTGAGAAAACTGATAAGAAAACTTTGTACCTAAATTACACcaatatgtttgttgttttaaacactTAGCAAAAACTTAGCTACGTTCTCTTAGCTGTTCACTCTAGAATTCAGAATACAGAACtcataattatattacaattaaacatttaatagttAACACGTTTCGTAAAGAAATATAAAgtgtgaaaaatatatgtattttgaatgcatatgtttttgttcttatgCAGCTAGAAGTCCCCACAGTATATTATTCCACATGTTGCACAGTAAACAGccacttaaaaaagaaaagaaagtcaaatacaaggaagaaaaaagtgTCGCATTACAATCAAGATGAATGTGGTCTGCTGCATCATGCCGGTTGGGCAGTATTGCAGTGGAAGTGTTGCTCAAATATAATGTCAATTGCAACATCAAATATCATCGCAATACTGACCCTGTCCAGATCCTACAGCCTTTCCAAGCTCTGCTGGAATGTCTCTCGTCCGTTACTCCTCTTCTCGTTGCCCTCGCTGAATTCAATCTTCCTCGGGCGGACTGACCGCAACGTCTTTCTATAGGATTGTTTGAAGGACCTGCTGGAGAAGCAGTATATGACCGGGTCCAGGACACTGTTCAGATAAGTGAAGGCAAAAGTCCCGTGAAACAAGCTTCCGTAAATGAAGAACTTGCCGCAGTTTTTGGGGTATAGTGTCTTCACCCCCAGGGCCAACACTGCGGACACGATGCTGGGCATGAAACAGATGGCAAACTCGATCACGATCAGGATGACCAGCCTGGTGATGCTCCTGATCTTGCCTTGAGTGCCTGCTTTCGTGCCCCTCAGTTTGCAGACGATACGACAGGTGCAGAAGATGATTAGGCTGAACGCCACTAGGAACTCCATGAAGAAAAGCACGCCATGCCATATCATGTCGGGGGTTGTTTGTTCGTAGGAACTGTAACTTCGGCaaagagttttattttcagacCGTTGTACCAGCTTGGCGTTGACCAGGTGCATAGACATCAGAGCCGTCCAGATCCATAACACCACAGCCACCTTTACTGCTCCAGTGAGAGTGATGATGTTGAACCGGTGGTTGGGATGGACAACCTTGAAGTAGCGGTCCATGGTGATGGCGGTGAGGAAGCAGATGCTGGCCGTGCGGTTCATGGCCAACATCAGCAGGTTGACCCCGCAGAAGGTCTCAGAGAAGACCCAGTCCTCCCCGCGAGTGTAGTTGTCAATCCTGAAGGGCAAGAAGATGATAAGGAGGAGGTCTGAGATCACCAGATTCAGCATGTACACCATGTAGGTCTTCCAGACTTTCACACGGAAACAGAAGACCCACAGAGCCAAGCCATTGCCAGCTAAACCGAAAATAAATTCCAAGGAGATGATGGGGGCCAGAACATACCCAACCAATGTGTGCGGTGTCGGGCAGTAGAAGAGACTTCTGTTCTCATCCATGTGAGACTCTGAGGCATCTACGCTACGGAGGAAAGCGGGCACAGAGATGCACGCTCTTCAGCACAGGAAGTCAAATAGAGAGTCGCTGAAGAAAGCAACCGCTTCATATCTCTTTCTGTGATGATGACAGCGTTTTGGCTCCTTAGGCTTAAGAGGA

Function

NR:

description
PREDICTED: metastasis-associated protein MTA3-like

GO: NA

KEGG:

id description
K11660 MTA; metastasis-associated protein MTA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001866 True 6983 mRNA 0.51 19 17885198 17931279

Neighbor

gene id symbol gene type direction distance location
AMCG00001860 NA coding upstream 85845 17794741 ~ 17799353 (+)
AMCG00001861 NA coding upstream 96411 17787746 ~ 17788787 (+)
AMCG00001859 eml4,LOC107698167,LOC107590012,LOC107695036,LOC107739484 coding upstream 98300 17783849 ~ 17786898 (+)
AMCG00001858 NA coding upstream 106499 17773315 ~ 17778699 (+)
AMCG00001862 NA coding upstream 116089 17766661 ~ 17769109 (+)
AMCG00001868 NA coding downstream 6465 17937744 ~ 17940790 (+)
AMCG00001882 abcg8 coding downstream 292775 18224054 ~ 18230265 (+)
AMCG00001875 NA coding downstream 356433 18287712 ~ 18294690 (+)
AMCG00001872 LOC108430462,LOC108273990,LOC107582773,LOC107749348,LOC107698817 coding downstream 397212 18328491 ~ 18340877 (+)
AMCG00001873 NA coding downstream 416517 18347796 ~ 18358955 (+)
G160895 NA non-coding upstream 23771 17860162 ~ 17861427 (+)
G160869 NA non-coding upstream 81020 17798199 ~ 17804178 (+)
G160782 NA non-coding upstream 476582 17408257 ~ 17408616 (+)
G160649 NA non-coding upstream 975165 16905249 ~ 16910033 (+)
G160648 NA non-coding upstream 982758 16899895 ~ 16902440 (+)
G160939 NA non-coding downstream 92917 18024196 ~ 18029816 (+)
G160943 NA non-coding downstream 107425 18038704 ~ 18039374 (+)
G160985 NA non-coding downstream 287485 18218764 ~ 18219031 (+)
G161170 NA non-coding downstream 992170 18923449 ~ 18923672 (+)
G161282 NA non-coding downstream 1523809 19455088 ~ 19457752 (+)
AMCG00001846 NA other upstream 422264 17417351 ~ 17462934 (+)
AMCG00001841 NA other upstream 702597 17179594 ~ 17182601 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other upstream 1507338 16237262 ~ 16377860 (+)
AMCG00001762 NA other upstream 2446167 15432337 ~ 15439031 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other upstream 2550618 15331620 ~ 15334580 (+)
AMCG00001881 NA other downstream 256623 18187902 ~ 18209391 (+)
AMCG00001883 NA other downstream 278730 18210009 ~ 18217138 (+)
AMCG00001880 NA other downstream 732716 18663995 ~ 18673815 (+)
AMCG00001889 cript,LOC107582781,LOC107728714 other downstream 968058 18899337 ~ 18901718 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004732 mta3 coding NC_007123.7 CM002896.2 25223799 ~ 25284510 (+)
grasscarp (Ctenopharyngodon idella) CI01000063_05281800_05302429 NA coding CI01000063 null 5280655 ~ 5302499 (+)