AMCG00001876


Basic Information

Item Value
gene id AMCG00001876
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 18358033 ~ 18363257 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001876
ATGGCCAAGCTTACTTTGCTCAGGACCGCAGTGGCGATCCGGACTGGACTTCCGAACCGAGGCCCTAGTTTGAAACGGCAGCTGCCCACACTGCACCCTGAGCCTGCACGGTGGTATAGCCGGGAAGAGTCCAGGTTGCAGCTGCAGAAGCTCAGGACACAGGAGATATGGTTTCGGAAGAAATTAAGAGCAGCGTTCAAGAGGTTCCCGGAGGCCCTGGAGGGCCCTGCAATTTACGGCAGACACCATGTGTACTACGAGGAGGGTGGCAGCATTTACCGGATGAGCCAGTTGGATGgagAGCCGGAGGCAGAGGAGGTGCTGTGTGTGGACAGATGGGGGGCAGGCGGGTCCGTCCAGCGGGTCAGACTGTCTCCGGGGGAGCGTCTCCTGGCCGCTACAGTGAAGAGCCCAGGCTGTGAGGAGGCCAGCTGCGTCATCGTGAGCCTGGGACGCCCCCCCCAGATTCTGCACACCGAGCCCAAAGTGTTCAGCTTCGAGTGGGCCACCGACAACCTCCTGTTTTACACCAGCCAGGAGACGCTGCAGTGCCGCCAGGTTCACCGTATTCTCCTGAGTGCCGAGGGGCCAGAGAGCAGCGTGGTGTACGAGGAGGACGACCCAGCGTTTTTCGTGGAGGTGAGCCGCTCCCGGGACAAGCAGGTCCTGACCATCAACTGCAGCAGTAAGAGGAGCTCCGAGGTGCGCCTGATTCAGTGTGGCTCCCCTCTGCGGCCCCCGACCCTGCTCCGGCCCCGCCGCCCCGGCCTGCTGTACCACGTGGAGCACAGCGGGGGGCAGCTCTACATCCTTGCCAACACCGCGCCTGGCAACGAGTACCAGCTGCTACGGACCGCTCTCGAAGGCCCAGGCGTGGGGGCGGAGTGGGAGCCGGTGTTCAGTCCAGCCCGGGGGGACACGCTGATCGACATGGAGGTGCTGGAGCGACACTGCGTCATGGCCCTGCGCGGCGGCGGGCAGCGGCTCCACCTCGACATCATTCCCCTCGACGACCCCTCGGGCACCTCCAGCGTCAAGCTCCCCGCCTGGGCCTGTGCCCTGGAGCCGGCGCCCACCACACTGACCCACAGCCGGGCTTTCCCCTTCGTCCTCTCCTCCCCGGTCCGTCCTCCCGCGCTCTTCCTCTTCTCCCCGGCGACGCGGCGCCTCAGCCTGAAAGAGGACGGCGAGGGAGCGCCCGGCGCGGACTACAGCACCACCCGAGTGTGGGCCGAGAGCAAGGATGGCACGCTGGTCCCGGTGACGGTGTTTCACAGGGGCCCCCTGGACGGGCTGGCCGGTGCCCCGCTGCTGCTGCACGTGTACGGCGCGTACGGGCTGGACCTCGGCATGACCTTCAGACCGGAGAAGAGGATGCTGCTGGACGAGGGCTGGACGCTGGCCTACTGCCACGTCAGGGGCGGGGGGGAGCGGGGCCTGGGTTGGCACCGCGCCGGGAGCCTGGAGAACAAGCGGCGCGGCCTGGAGGACCTGGAGGCCTGCGTGCGGCGGCTGTTCGAGCTGGGCGTCTCCCGGCCCGCGCTCACCGCCCTCAACGCACGCAGCGCCGGGGCGGTCCTGGCGGGGGCACTGTGCAACGAGCAGCCACACCTGCTGCGGGCTGTCACACTGCAGGCTCCTTTCCTGGACGTCCTGGGCACCATGCAGGACCCTTCCCTGCCCCTGACTAGATACCCCTCCATGCTGCTCACGGCCTACGAGGGGGACCAGAGGGTGCCGCTGGCAGGAGTGCGGAGATACGCGGACAGGCTGGCAGCAGCGGTGCAGACTTACGCCGGCAGCCTGAAGGAAGCAGAATCCGATCCTTTGCCGTCCATCGTTTTAGACGTCCGGCCTGGCGGAGACCACTTCGGCCCCGAAGACCTGGACAGGTCTCTGAAGGAGGTAAAACCCACTGCACCAATTTATGTCACATTTAAGACCGTATCGAGGGAGCGTGCCGAGAACCGTTCCACAAGGGTCTGCCcagaatcattaaaaaacaccAGAAAAAGACTCTCTGCTCGTGTGTCTAACTACAGAATTGACTTTCTCTTCTGTCAGGTTGCCAGGCAGTTCGCCTTCCTCTACAGAGAGCTGGGGATCGCTCTACCGGGCCAGCGGGAGCGGAGGAGGTAG

Function

GO: NA

KEGG:

id description
K22582 PREPL; prolyl endopeptidase-like

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001876 True 2139 mRNA 0.65 13 18358033 18363257

Neighbor

gene id symbol gene type direction distance location
AMCG00001884 NA coding downstream 79141 18232030 ~ 18278892 (-)
AMCG00001885 NA coding downstream 134281 18216946 ~ 18223752 (-)
AMCG00001870 NA coding downstream 170050 18135097 ~ 18187983 (-)
AMCG00001871 NA coding downstream 227866 18128714 ~ 18130167 (-)
AMCG00001867 NA coding downstream 411522 17938913 ~ 17946511 (-)
AMCG00001878 six2a,six2,LOC107666385,LOC107602488,LOC107711421,LOC107602487,LOC107585295,LOC107733704 coding upstream 208791 18572048 ~ 18576564 (-)
AMCG00001879 NA coding upstream 297745 18661002 ~ 18663390 (-)
AMCG00001887 NA coding upstream 342866 18706123 ~ 18719975 (-)
AMCG00001893 pigf,LOC107550047,LOC107698824,LOC107749355 coding upstream 525194 18888451 ~ 18898999 (-)
AMCG00001892 LOC108429343,LOC106589406 coding upstream 541938 18905195 ~ 18910940 (-)
G161030 NA non-coding downstream 12011 18262244 ~ 18346022 (-)
G161039 NA non-coding downstream 53935 18301084 ~ 18304098 (-)
G160944 NA non-coding downstream 318659 18038704 ~ 18039374 (-)
G160928 NA non-coding downstream 442342 17915418 ~ 17915691 (-)
G160903 NA non-coding downstream 491812 17866016 ~ 17866221 (-)
G161161 NA non-coding upstream 523037 18886294 ~ 18887568 (-)
G161165 cript,LOC107582781,LOC107728714 non-coding upstream 535890 18899147 ~ 18901718 (-)
G161206 NA non-coding upstream 720855 19084112 ~ 19084976 (-)
G161302 NA non-coding upstream 1091867 19455124 ~ 19457742 (-)
G161346 LOC107739892 non-coding upstream 1728856 20092113 ~ 20093345 (-)
G160925 mta3,LOC105904126,LOC106516625,LOC107749351 other downstream 447180 17908754 ~ 17910853 (-)
AMCG00001863 LOC105006094,LOC104951035,LOC101160874,LOC106578938 other downstream 492654 17860139 ~ 17865379 (-)
AMCG00001865 NA other downstream 547936 17808018 ~ 17810097 (-)
G160817 NA other downstream 826043 17530866 ~ 17531990 (-)
AMCG00001843 NA other downstream 1265484 17091353 ~ 17092549 (-)
G161153 NA other upstream 472525 18835782 ~ 18850884 (-)
AMCG00001945 NA other upstream 1977168 20340425 ~ 20347505 (-)

Expression


Co-expression Network