AMCG00001881


Basic Information

Item Value
gene id AMCG00001881
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 18187902 ~ 18209391 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001881
ATGGCAGGTGTTGTAACTGCAGAAAAAGGCTCTGAGGAGTGGTTAAGGTGcggtgatgctgcgCACGCGGTCCCGGCCATGGCCGAGGACGTGGGCTTCGAGGGACCGGTGGACTGGCGGGAGAGGTGCGTGACCCTGGAGAGCCAGCTGCTGAAGTTCAGGGTGCAGGCCAGCAAGATCCGGGAGCTGCTGGCCGAGAAGATGCAGCAGTTGGAGAGGCAGGTCCTAGACGCAGAGCGACGCGCGGAGAAAGCTCACCAGCAGGTGCAGGTGATGGAGGAGAAGCTGAAGGCGGCGGACGTCCAGACCAGCGAGGCAGAGAACCGGCTGTACCGCCGCTGCCAGGACCTGCAGACCCTGCTGCAGGAGAAGGATGACATCATAGTGATGCTGGAGCAACAGCTGGACGAGCAGAAGCAAATCCGACTGCAGGAGGCCAAGATCGTGGAGGAAAAGGCGACCAAGATCAAAGACTGGGTGACGCTGAAGCTGCGTGAGCTGGAGGTGGAGAATGAGGGCCTGCGCGCCAGCACTCAGAAGCAGAGCCAGCAGATCCAGGAGCTGCAAAGACAGGTTCAGGCCGCAGAGCAGAAGCAATCCAGCCCGGCACCACGGCCCGGAGAGGCCCAGCGTCTCAGCAGCCTGACCTTCGGCTGCTTCCAGGTCCGAGCCAAAAGTCCGCAGGTCCTGACTGGGCCGGAACCGGGCCGCCGGGCCGTCACCAGCAGGCAGGAGGGCGGGGTGTCCGAGGAGGGAACACGACCCGTGAATGGTGGAGCACAAGACTCTGTGTTTAAATCTGAGGACGTCGGCAGGACCCCCAGGTCTCTCCAGATGGCCGGGTCCGAGAGGGCAGATGGCGCCGGGCGTGGGGGCGAGGGCAcctcagaggaggaggaggcggaggcggGGGGCCGGGGCGGGGGGCCGTCGCGGCGCTTGTCCTCGGCGCTGTCCAGTGTGGCGTCCGAGGGAGACGGGCCGCGCTTCAGCCGGGCGGGCAGCGAGACCTACCTCACCGCCTCCGACGACAGCAGCTCCCTCTTCGACGACGACATGCAGCGCCTGGAGCGGCCCCACGAGGGGGAACGGGCCGCACCGGGGAGCGGGCGGCGGGGCAAGGCTGGCAGGGAGGGGGACAGCTCCTCGGACGAGCTCAACAAGCGCTTCCAGTCCCAGCGCCTCgactcgtcctcctcctccagcgAGACCAACACCCCCAGCCCCATCCTCACCCCCGCCCTCACTCCCAAACACCCCACACCCACCCTGGACCCCGGCACCCTCTCCCTGCCCCAGTCCCCCGACGGCGTCCACGCCAAGATGCCCCGGCCCAAGCTGCGGACCCCCAATGTGTTCAGCATCAGCGTGGCGCTGGCCCGGAAGCACCTCAGCCAGCCGCAGCTCAGCTCGGAGCATCCGTACGGCCGCACGCGCAACGCCATCAGCATGGTGCGCCCGCTGCGGCCCCAGGAGACCGACCTGGACCAGGAGCAGGACATGGAGGTGGGCTGCGACGAGGGCATCTTCTCCAACGACTCCTCGGAGGCCCCCACCAGTGGCGAGGAGCCCGAGATTTACGCCGTTGCCAAGTCCGGGATCAGACTGTCTGAGACGGTCTGCCCTGACCTTGCCAAGAAAAGCCCCGGGCCCATGGCGTCGTACTCAGCCTCGGCTTCGTACACCTCCCTGATCTACAAGAACATGACCACCCCAGTCTACACCACGCTGAAGGGGGGCAGCAGTCCCGGCAGCCCCCGTGCCCTCAAGAGAGGCGTGTCCCTGTCCTCGATGACCTCCGAGAGCGATTATGCCATCCCGCCCGATGCCTACTCCACCGACACCGAGTGCTCCGAGCCCGAGCAGAAGCTGCCCAAGACCTGCTCGTCCACCAGCGACAACGGAAAGAGCGAACCTTTGGAGAAGTCCGGGTATCTGCTGAAGATGGGCGGCAGAGTGAAGACCTGGAAGAGACGCTGGTTTGTGCTGAAGGGCGGGGAGCTGCTGTACTACAAGTCCCCAAGCGATGTGATCCGGAAGCCCCAGGGCCAGATCGAGCTCAGCACGTCCAGTAGTATCGTCCGCGGAGACGGGAAGCAGACAATCCAGCTCGTCACAGAGAAGCGGGTCTACTTCCTGACCGCCGACTCCCCGAATCTCCTGGAGGAGTGGATCAGGGTCCTGCAGAACGTCCTGCGGGTCCAGGCGGCCAGCCCCCTCTTCACATGCCCCGAGGTCCGGCCCAGGATGAAGGGCCTGCTGACCAAGGTGAAACACGGATACTCCAAGCGAGTGTGGTGCGCCCTCATCGGGAAGAGCCTCTACTACTTCCGCAGCCAGGAGGACAAGTTCCCCCTGGGGCAGATCCGGCTGTGGGAGGCCCGAGTGGAGGAGGTGGATCGCTCCTGTGACTCGGACGAGGACTACGAGGCCAGCGGCCGGAGCCTGCTGTCCACCCACTACACCATCGCGGTGCAGCCCAGGGAGCAGGGCCCCACCTACCTGCTCATCGGCTCTCGCTACGAGAAGGACGCCTGGCTCTACCACCTGTCCGTGGCCGCGGGCAGCATGGCGAGCGAGGTGGGCACGGAGTTCGAGCAGCTGGTGGGCAAACTGCTCAGCGCGGAGGGAGACCCGGGATCTCAGATATGGAGACACCCCGCCCTGTGCTTCAGCAAAGATGGCATCCCCTCGTCCCTCACCACCCTGCCCTCACAGGCGCTGCAGACCGAGGCCATCAAGCTCTTCAAGACCTGCCAGCTGTTCATCAACGTAGCGATTGACTCCCCGGCCATCGACTACCATGTGTCTCTGGCCCAGAGCGCCCTGCAGGTGTGTCTGACGCACCCGGAGCTGCAGAACGAGATCTACTGCCAGCTGGTGAAGCAGACCCAGAGGAGACAGCCGCCAGGCCAGGCCGGGCCTCTGCAGgGCTGGCAGTTCCTGGCTCTGTGTGTGGGCCTCTTCCTGCCCCAGCACCCGTTCCTCTGGTTCCTGCAGCGCCACCTGAAGCAGCACGGAGAGTCCAGGACGGAGATTGGCAAGTATGCCATCTACTGCCAGCGCAGCGTGGAGCGGACACAGCAGAGGGGCGAGCGCCAGGCCCGGCCGTCCCGCATGGAGATCCTGTCCATCCTGCTGAGGAACCCCTACCACCACTCACTGCCCTTCAGCGTGCCCGTGCACTTCCTCAACGGCACCTACCAGGTGGTGGGCTTCGACTCCTCGACCACGGTGGATGAGTTCCTGGGCCGACTCAACCAGAGCTCAGGGATGCGGAAGCCGGCCCAGTCGGGGTTCGCCCTGCACACCGACGACCCCGCCGGGAGGGACCTGGAGCACCACCTGCAGGGCGGCATCAAGGTCAGGTCTCGTCTCCCGCCGACGGGCAAGATGTCTCATGCCGAAAGATGCGATTGCTCTGACCAGCGTGTTAACTCCGCTGCCTTGGCCCTGGCCGATCTCCTCCCCTCTCAGATCTGTGACATCATTTCCAAATGGGAGCAGGCGTCCAAGGAGCAGCACCCCGGCAAGTCCGAGAGCGCCCGGACCGTGAGGCTCACCTACAAGAACAGactGTATTTCTCCCAGCAGGCTCGGGGAGAGACGGAGCGCGAGCGGCTGCTGCTGACCTACCAGGCCAACGAGGAGATCGTGGACGGGCATTTCCCGGTCAACAAGGAGCTGGCGCTGGAGATGGCGGCCCTGCTGGCACAGGTGGAGTTCGGGGACTTCGAGCGGCCGTTCTCCCCTGCCCCGAAACAGGGCTCGGCTCAGTCCAAGTCCAATCAGACGCTGAAGCAGGTCCTGGAGAGGTTCTACCCCAAGCACTACCGACAGGGCTGCACCGAAGACCAGCTCAGACAACTGCGGCAGCGCCTCTCGGGCAGGTGGGGGTCTCTGAGGGGCCGCAGCTCGTCCGACTGCGTCCGTATCTACCTGACCGTTGTGAGGAAGTGGCCTTTCTTCGGTGCCAAGCTGTTTGCAGCCAAGCCCGTCACCCCCTCACCCCTGCAGGACGCCCCCGTGTGGCTGGCAGTGCACGAGGACGGCATCAGTGTCCTGGAGTTCAGCTCCATGCGGCTCCTGGTCTCCTACGGCCACCACAACCTGATGACCTTCGGGGGCTGCCGGGATGACTTCATGCTGGTGGTTGGGCAGAGCATCGGGAACAGTCCCATCAAGGACAAGCCCACGGAGAAGCACCTCTTCGCGATGGCTAAACCCAAGATCCTGGAGATGACTCTGCTCATCGCCAGCTACATCAACAGCGTCCACCAGCAGAAAGCCGCCGCCCACCACCTCTCCGCCCCGGCGCTGCTCTCAGCTCCGCCCATGGGATTCAAGAGCAAGGAAGTGGGCGGCCGGCCCAGCAAGGGGCCCACTCTGCTGTGAACGCCCCCCACCGGCGGCTGTCTGGACCGCGGAGACGGGGtttcctcctccagctctcaGGGCCGTCCACCCGTGCTGCGGCTGTAGCAACCAAAGAGCACCGTTTACCCAGACCGTACCGCGCTAAACTTCGGCGTCACAAACCATTCAGAGTCCGAGGAGCCGTCTCTGCCCGAGCTGCCTCTAACGAGCTGCCCCTAACGAGCactggaaagcaatgcaaagtTCAAATGCAAAAACTTGAAGGTACATAGCTtccagattaaaaacaaatctattatttatttatgttaagcTTTCCATATAGCAGTTAAGGTCACAGACCCCCTAGTGGTTGTAAAGATGTGCTGCAAGCTCGGGGGCTCTGTGTTTGCTGTAATTCGTGAACCAGGAATGAACTAACTGGAAACTTAATCAATATTCTGCTTCGGCAGATAAGACAGGTTTTACTCTCAGTCTATCTTGTATCACTGCTGATACtcgtttttttaattgaaaactgcaCAGCTGTGTTGTTCTAAATTTCAGGACCCTgtcttggttttatttttgtgaccaTTCGGTCTCTGTTAGTCCCACTAAGAGTTGTGTATCCCTCCATTGTTATAACCATGCTGTGATATCTGTATTAACCTGTAAACACTCTGGTGTGTGTAATATACAtcgaaatatatacattataattgaGCTTTGTTATGTAGTCTGACTGcctgtattatgtatttcagaaaagacaaaacatatgTGAACGCAAAGACAACAGAGAAATATTAtctgcttaaatatttattttgataattgcCAGAATGCTTGGAAATTATAATTCTGATTCTCACAGaggtacagtatttaaatatttaataaaagcacttttatCTACCAA
>TU202633
CGGGCAGTGAGAGCGTCAAAACAAACCCCAAATCCACGCCTGTGTCCCGCACTGCCTCCACGACACACGTGTAGCATGTCATTTCCGGGAGTGTTATAAGCCCGCCCCCGGAAGGCGCTGATTGGACGCCGCGTACTGCTCTACCCTGCCTACCTCACGCTAGACGGCCCCTTGGACTGTCAATCAAACTACGTCCATGTCGTCATCTGGATTACGTAGCCACGCCTCGGTGCTCGCTGATTGGACAGGCCGCGGGTTGGCCACGCCCCGCCCTCGGCAGCCCTGTGGACAGCGGGACGCGGAGCCGAAGTGGCAGCTTCGGGAGGAATCGGTTTACCGAGTGTTTTCCGCTCCCGGGTGGGAATAAGGCGACAGGGCCGGGATGCCCGGGACCGAGGACTAGAGCAGACCGTCCGCACTACACTCGCACTCGgctgcgCACGCGGTCCCGGCCATGGCCGAGGACGTGGGCTTCGAGGGACCGGTGGACTGGCGGGAGAGGTGCGTGACCCTGGAGAGCCAGCTGCTGAAGTTCAGGGTGCAGGCCAGCAAGATCCGGGAGCTGCTGGCCGAGAAGATGCAGCAGTTGGAGAGGCAGGTCCTAGACGCAGAGCGACGCGCGGAGAAAGCTCACCAGCAGGTGCAGGTGATGGAGGAGAAGCTGAAGGCGGCGGACGTCCAGACCAGCGAGGCAGAGAACCGGCTGTACCGCCGCTGCCAGGACCTGCAGACCCTGCTGCAGGAGAAGGATGACATCATAGTGATGCTGGAGCAACAGCTGGACGAGCAGAAGCAAATCCGACTGCAGGAGGCCAAGATCGTGGAGGAAAAGGCGACCAAGATCAAAGACTGGGTGACGCTGAAGCTGCGTGAGCTGGAGGTGGAGAATGAGGGCCTGCGCGCCAGCACTCAGAAGCAGAGCCAGCAGATCCAGGAGCTGCAAAGACAGGTTCAGGCCGCAGAGCAGAAGCAATCCAGCCCGGCACCACGGCCCGGAGAGGCCCAGCGTCTCAGCAGCCTGACCTTCGGCTGCTTCCAGGTCCGAGCCAAAAGTCCGCAGGTCCTGACTGGGCCGGAACCGGGCCGCCGGGCCGTCACCAGCAGGCAGGAGGGCGGGGTGTCCGAGGAGGGAACACGACCCGTGAATGGTGGAGCACAAGACTCTGTGTTTAAATCTGAGGACGTCGGCAGGACCCCCAGGTCTCTCCAGATGGCCGGGTCCGAGAGGGCAGATGGCGCCGGGCGTGGGGGCGAGGGCAcct

Function

GO: NA

KEGG:

id description
K24020 PLEKHH; pleckstrin homology domain-containing family H

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001881 True 5278 mRNA 0.61 29 18193816 18209391
TU202633 False 1262 TUCP 0.64 8 18187902 18200855

Neighbor

gene id symbol gene type direction distance location
AMCG00001868 NA coding upstream 247112 17937744 ~ 17940790 (+)
AMCG00001866 LOC107582777,LOC108273982,LOC107698822 coding upstream 256623 17885198 ~ 17931279 (+)
AMCG00001860 NA coding upstream 388549 17794741 ~ 17799353 (+)
AMCG00001861 NA coding upstream 399115 17787746 ~ 17788787 (+)
AMCG00001859 eml4,LOC107698167,LOC107590012,LOC107695036,LOC107739484 coding upstream 401004 17783849 ~ 17786898 (+)
AMCG00001882 abcg8 coding downstream 14663 18224054 ~ 18230265 (+)
AMCG00001875 NA coding downstream 78321 18287712 ~ 18294690 (+)
AMCG00001872 LOC108430462,LOC108273990,LOC107582773,LOC107749348,LOC107698817 coding downstream 119100 18328491 ~ 18340877 (+)
AMCG00001873 NA coding downstream 138405 18347796 ~ 18358955 (+)
AMCG00001874 NA coding downstream 154911 18364302 ~ 18367236 (+)
G160943 NA non-coding upstream 148528 18038704 ~ 18039374 (+)
G160939 NA non-coding upstream 158086 18024196 ~ 18029816 (+)
G160910 NA non-coding upstream 270848 17916795 ~ 17917054 (+)
G160895 NA non-coding upstream 326475 17860162 ~ 17861427 (+)
G160869 NA non-coding upstream 383724 17798199 ~ 17804178 (+)
G160985 NA non-coding downstream 9373 18218764 ~ 18219031 (+)
G161170 NA non-coding downstream 714058 18923449 ~ 18923672 (+)
G161282 NA non-coding downstream 1245697 19455088 ~ 19457752 (+)
G161285 NA non-coding downstream 1298852 19508243 ~ 19508522 (+)
G161392 NA non-coding downstream 2026786 20236177 ~ 20236391 (+)
AMCG00001846 NA other upstream 724968 17417351 ~ 17462934 (+)
AMCG00001841 NA other upstream 1005301 17179594 ~ 17182601 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other upstream 1810042 16237262 ~ 16377860 (+)
AMCG00001762 NA other upstream 2748871 15432337 ~ 15439031 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other upstream 2853322 15331620 ~ 15334580 (+)
AMCG00001883 NA other downstream 618 18210009 ~ 18217138 (+)
AMCG00001880 NA other downstream 454604 18663995 ~ 18673815 (+)
AMCG00001889 cript,LOC107582781,LOC107728714 other downstream 689946 18899337 ~ 18901718 (+)

Expression


Co-expression Network