AMCG00001887


Basic Information

Item Value
gene id AMCG00001887
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 18706123 ~ 18719975 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001887
ATGACACGTCAGCGGCTGGACGCACAATATGGACCAGGCGTAGTTCATGCGTTAACGTCCCCGACTTTACATGAGCTGGAGGTCTGGATGGCcaggataataataattgcccTCTGTGGGTCTGATGTGGCAGCTGAGGCATCTCTGGAGatcaaacagacaaaaacacattcaatgcAAGGGCACCAGAATTTTTCTTTCCTGCACCTGATCCCTGAAAATGGACCCATCAGGGCCAATtcgtccccggAACAGGAGGAGGACGATgtggacgaggaggaggaggaggaggaggaggaggagtggaaGCCGAAGACGAAGAGCAAGGCCCCACCGAGGAAGAAAGCGGAGCCTGCCGTGAGAAAGGAGGCCAAGCCAAAGGTTCCAAAGGTTCCAAAGGTTCCAAAGGTTCCAAAGGTTCCAAAAGCGCCGAAGGTTCCAAAGGCGCCGAAAGAGCCGAAGGTGCCGAAGGAGAAGCCTCCACGCAAACCGGCCGAGCGGAAGCCCAGAGCTCCCCGGGCGAAGAAGGGCACGGCCGAGCCTGAGGGGACAGTGGGGCCCCCGGCTGAGGTCAAGGAAGAGAGGCTGTCTTTCATCGTGCCGCAGGGGCCCCCCGTGGCCGGCGCAGACCCCTCGGGGGAGCCGTCCTCCAGCCACCGGCCGCCCGGGGTGAAGAAGGAGGAGCCGCCCGATGAGGACTACACCTTCGACGAGCCGCCCACAAAGAAGCTGAGGACAGGCGACGGCCCCAGGGGGGTGACGGTGAACGTCCCCGGGCAGAAGACGGGTCCGGGGGAGGAGCTGCACATGAGCTGGGACCTGGTGCAGGTGCTGTCCCAGATGACCGGTGTGGAGCCCTGGGTGTGCGCCAACATCGTGGCGCTCTTCCGGGAGGAGAACACCATCCCCTTCATCGTGCGTTACAGGAAGGAGCTCATCAACCACCTGGACGCCGACGCAGTGCGGGACGTGCagctggtcctggaggagctgcgAAACGTGGCAAAGAAGGCGCAGTCCCACGTGCAGTCGCTGAAGAAGGACGGGGTTCTGACCGGCGCCCTGGAGGAGAGCCTGCGCGGCTGCAGGACGGCCGAGGAGCTGGAGCACGTGTTCGCCCCCTATAAGAAGGGCAGCAAGCTGTCCAAGGCCCGCCGGGCGAAGCAGCTGGGCCTGGAGCCGCCGGCGCTGACTCTGCTGCAGAACCCGCAGGCGCTGGACCTGATGGCCTTCGTCCAGCCCCAGACTGAAGGGCTGGCCTCGCTGGCGGAGGTGGAGTCGGGGGTGCAGCAGATCCTGGCCGACATGATCGCCAAGGACAAGGAGACGCTGGAGTTTGTGCGCAAAGTCTCTGACCAGAGCCCGGTGACGATCCACTCCGCCGTGTCGAAGGCTGCGCTGAAGGAGAAGGAGCAGAAGGACGAGGCGGCGGGGAAGCCCAAGGACATCGACAAGTTCAACCTGTACCTGGACTTCACCGCCTACGTCAACCGTGTACAGCACCACCAGATCCTGGCCATTAACCGAGGGGAGAGTCTGAAGATCCTCACGGTGAAGGTCAACATCCCTGACAGGGTGAAGAACGAGTTCTGTAGGTGGTGCCTCAACGTCAGGTGGAGACCCAAGGGCTACGCGAGGGAAGAGCACATGAAGATCCTGCGCGAGGCCGTGGACGACTCCTACAAGAGGCTACTACTGCCGCTGCTGTGCAGGGCCTACAGgtccaGTCTGACGGTCAGTGCGGAGAAGGAGTCCATCGCCATGTTTGTGAGGAACCTCCGGCAGCGTCTGCTGGTGTGTCCGGTTCGCGGGCGCCAGATCCTGCACACGGACGTGGTGTACCTGCACTCCGGGGGAGGGGGCCGTGAAGCCGAGAAGCTGCGACATCTGATGATGAAATACAACTGCTCCACGGTGGTGATCGGCAACGGCACCGCTTGCCGGGAGACCGAGTCCTTCTTTTCTGACCTCATCGCCAGGAAGTACTTCCAGCCCCTGGACATCTCGTACTGCCTCGCCAAGCGGTGGCCGGCAGGGTGTGGACCCGTGGGTTTGGACCGCCGGTGCCGGTAG

Function

GO:      GO:0008536

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001887 True 2073 mRNA 0.62 15 18706123 18719975

Neighbor

gene id symbol gene type direction distance location
AMCG00001879 NA coding downstream 42733 18661002 ~ 18663390 (-)
AMCG00001878 six2a,six2,LOC107666385,LOC107602488,LOC107711421,LOC107602487,LOC107585295,LOC107733704 coding downstream 129559 18572048 ~ 18576564 (-)
AMCG00001876 NA coding downstream 342866 18358033 ~ 18363257 (-)
AMCG00001884 NA coding downstream 427231 18232030 ~ 18278892 (-)
AMCG00001885 NA coding downstream 482371 18216946 ~ 18223752 (-)
AMCG00001893 pigf,LOC107550047,LOC107698824,LOC107749355 coding upstream 168476 18888451 ~ 18898999 (-)
AMCG00001892 LOC108429343,LOC106589406 coding upstream 185220 18905195 ~ 18910940 (-)
AMCG00001891 mcfd2 coding upstream 255056 18975031 ~ 18979293 (-)
AMCG00001902 NA coding upstream 320478 19040453 ~ 19042847 (-)
AMCG00001903 LOC107670363 coding upstream 330327 19050302 ~ 19052311 (-)
G161030 NA non-coding downstream 360101 18262244 ~ 18346022 (-)
G161039 NA non-coding downstream 402025 18301084 ~ 18304098 (-)
G160944 NA non-coding downstream 666749 18038704 ~ 18039374 (-)
G160928 NA non-coding downstream 790432 17915418 ~ 17915691 (-)
G160903 NA non-coding downstream 839902 17866016 ~ 17866221 (-)
G161161 NA non-coding upstream 166319 18886294 ~ 18887568 (-)
G161165 cript,LOC107582781,LOC107728714 non-coding upstream 179172 18899147 ~ 18901718 (-)
G161206 NA non-coding upstream 364137 19084112 ~ 19084976 (-)
G161302 NA non-coding upstream 735149 19455124 ~ 19457742 (-)
G161346 LOC107739892 non-coding upstream 1372138 20092113 ~ 20093345 (-)
G160925 mta3,LOC105904126,LOC106516625,LOC107749351 other downstream 795270 17908754 ~ 17910853 (-)
AMCG00001863 LOC105006094,LOC104951035,LOC101160874,LOC106578938 other downstream 840744 17860139 ~ 17865379 (-)
AMCG00001865 NA other downstream 896026 17808018 ~ 17810097 (-)
G160817 NA other downstream 1174133 17530866 ~ 17531990 (-)
AMCG00001843 NA other downstream 1613574 17091353 ~ 17092549 (-)
G161153 NA other upstream 115807 18835782 ~ 18850884 (-)
AMCG00001945 NA other upstream 1620450 20340425 ~ 20347505 (-)

Expression


Co-expression Network