AMCG00001891 (mcfd2)


Basic Information

Item Value
gene id AMCG00001891
gene name mcfd2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 18975031 ~ 18979293 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001891
AGGCTGCTACGGGCTGCTGCGAGGGCCAAAAATACGGAGACTAACCGAGcgagagggagacggagagagcGAGTAAATCAGATCCTGTCGCCATTGGGTGAAGCGCTCAAAGGCAGCGCAGGATAATAACGGGGTTCACGCGTCTGAGGCGGCCTCCATTCTTCCCCCTCCACTGTGCCGACAGCCTGCCAGGTGTGTCGTGAGCAGCACCGTGCCGCGCAGTGTGCCAGGAGTGAGCCGTGCCCAGGCAGTGCTGCCCGCCCGTGGGACAGAGGATGCTGTGGAGAGACCGGGGCGGCGCGGTGGTCGTGCTTTTCCTGCTCGGCTGCCTGCTGTCGGCCAGAGCGCAGGACCACCACGACCACGCCGAGGTCACCGAGGGCCACCGGCCCAACATGCGGCTCGACAGGAACATGGTGCAGGACAAGGATCACATCATGGAACATCTGGAAGGCGTGATTGACAAGCCGGAGTCGGACATGAGCCCCCAGGAGCTGCAGCTGCATTACTTCAAGATGCACGACTACGACGGCAACAACCTGCTGGACGGCTTGGAGCTGGCCACGGCCATCGCACATGTGCACAAAGAGGAAGGGGGCGAACACAGCCAGCCCATGAAAGAGGAGGACCTGGTCAACCTGATCGACGACGTGCTGCGGGACGATGACAAGAACAACGATGGGTACATCGACTACGCAGAGTTCGCCAAGTCGCTGGAGTGAGCGCGGCGCGGGGGGGAGCATGGCGGCCGAGCTGCCGAATCCGATCTAAACGCACAGACGCCCCCCGCCTGCCCCCTCTGAGTGCGACGAGCAGCAGAACTACGTCCGAGTGGATTGCGAACTTTGAACTACCAGCATTGTTTAAATTCAGTATAATTGAAGATAACTGCCATAATAATGTCTGAAGTGAGGAAcgtctctctgtgtgctgtgtgtccgTTTGAGTCAATTCTGTACAGTCACCCCATAATGTCTCAGTGCCGTACAGTGTTATAATGTTGTCTCTCATTGGAGCTGAAATGTAAAGCGGTGGCTGGGGGGCAAGGGGGGAGGTAGACATCCACACCAGTGTCATATAAAGAGGACATTTGGACGAGCTGAGAGGAGTCTCTGCTTTGAAACTAAATGTGAACCGTGATACCCTCACTGTGGAAACCCTACATATTAAACTGTGACAATGACATCATCACTGTGAGACTGTGAACAATCACCCATCGCCCATCACTCACCTAGACTTCAGAAGCCTCAGCACGACCCGCGGAGGTTGGAGGCGAGGTTAAATTCTTCAAGAAATAAGACCAATTAAGAGTCACCAAAGCAGAGTTGTGTACGGTATCGCTCTCCCACAGAACGTgaggcaaaacaaaatgtcagacTTAAAATGAGTGTTGCCCGGGTGCATCCTACACTGTCCATGTACTGCCATAGGTGTGTAGACAGTGAATTAAAGTAAATGtccctgtttttaaaataaaaacatacagtgtATGTTTTGCACCTTGATCACAAAAGGCAGACTGGGCAAAAAGCAGAGtttcccccccttttctgaTTAATACAAGAACAGCAACAGAGCACAGCGCTCCTTTCTCAGGGTCTGGGGTGACGGTACCTGTTGGCATCTCGCTGTCCTAGAAGGAGGAAGACGGGACGTCCCCCTACAACGATGATGTGTCACCGAGAAACTGAACAGCCTGTCGGTGCTGTGCTGGGATAGGAGCAGGGGCAGTGGGCAGGGCAAGGAGGCCAGGCCGTTCTGGTGAATCATTTAACCCCCCCTGAAACGCAGCAAGTTAACGAGTGACTATCACTGGTCAGTTGTGCATTATTGATTGTACAGTGAGAGAAAGTGGTGTGATATCATAAGTGAGTGACATCACAAGCAGCGTGTGTTTCAGTGTGGGGGGGAAGGGGAACAGAGAACAGACCTGTACCATCTGCCCGAGTCCGGTATGTTTGCTGCTTGTACCGacttcaatgtatattttattacctagtaaaaaataaaacttgaataTATCAAATAGTTCTATTATAATCACTGTGTATTAATGTAGACTTCACAAGATCTTTGTAAATGTGAAAGGAAGTCATTGGAGTTTATTGAATCACGTTTTCTAAAGGAAAAgccaaaaagaaaatcaaaagcaacACTGTGTTTGTAACAATAatatgaacaataaaaacaatcctATTTTCAGAACTTTTACTGCAGATCGTTTTGAGAAACCAGGGTGTTAAAGACATCTACATCTTGTACTTGTATTCTACAGAGACTGTGACTGGTTTGTAATGATGTTTTCATGTCTAATAAAAGGAATATGTCTCTCAATCCAGACTACTGCCAGACTGGG

Function

symbol description
mcfd2 Predicted to enable calcium ion binding activity. Orthologous to human MCFD2 (multiple coagulation factor deficiency 2, ER cargo receptor complex subunit).

NR:

description
PREDICTED: multiple coagulation factor deficiency protein 2

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K20364 MCFD2; multiple coagulation factor deficiency protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001891 True 2356 mRNA 0.50 4 18975031 18979293

Neighbor

gene id symbol gene type direction distance location
AMCG00001892 LOC108429343,LOC106589406 coding downstream 64091 18905195 ~ 18910940 (-)
AMCG00001893 pigf,LOC107550047,LOC107698824,LOC107749355 coding downstream 76032 18888451 ~ 18898999 (-)
AMCG00001887 NA coding downstream 255056 18706123 ~ 18719975 (-)
AMCG00001879 NA coding downstream 311641 18661002 ~ 18663390 (-)
AMCG00001878 six2a,six2,LOC107666385,LOC107602488,LOC107711421,LOC107602487,LOC107585295,LOC107733704 coding downstream 398467 18572048 ~ 18576564 (-)
AMCG00001902 NA coding upstream 61160 19040453 ~ 19042847 (-)
AMCG00001903 LOC107670363 coding upstream 71009 19050302 ~ 19052311 (-)
AMCG00001904 NA coding upstream 74437 19053730 ~ 19054245 (-)
AMCG00001906 NA coding upstream 75036 19054329 ~ 19054625 (-)
AMCG00001905 NA coding upstream 75452 19054745 ~ 19054972 (-)
G161165 cript,LOC107582781,LOC107728714 non-coding downstream 73313 18899147 ~ 18901718 (-)
G161161 NA non-coding downstream 87463 18886294 ~ 18887568 (-)
G161030 NA non-coding downstream 629009 18262244 ~ 18346022 (-)
G161039 NA non-coding downstream 670933 18301084 ~ 18304098 (-)
G160944 NA non-coding downstream 935657 18038704 ~ 18039374 (-)
G161206 NA non-coding upstream 104819 19084112 ~ 19084976 (-)
G161302 NA non-coding upstream 475831 19455124 ~ 19457742 (-)
G161346 LOC107739892 non-coding upstream 1112820 20092113 ~ 20093345 (-)
G161391 NA non-coding upstream 1246364 20225657 ~ 20225919 (-)
G161475 NA non-coding upstream 1459175 20438468 ~ 20438673 (-)
G161153 NA other downstream 124147 18835782 ~ 18850884 (-)
G160925 mta3,LOC105904126,LOC106516625,LOC107749351 other downstream 1064178 17908754 ~ 17910853 (-)
AMCG00001863 LOC105006094,LOC104951035,LOC101160874,LOC106578938 other downstream 1109652 17860139 ~ 17865379 (-)
AMCG00001865 NA other downstream 1164934 17808018 ~ 17810097 (-)
G160817 NA other downstream 1443041 17530866 ~ 17531990 (-)
AMCG00001945 NA other upstream 1361132 20340425 ~ 20347505 (-)

Expression


Co-expression Network