AMCG00001917


Basic Information

Item Value
gene id AMCG00001917
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 19507997 ~ 19511624 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001917
ATGGAAATCTCCTCCTCCGTCTCCCTGTGGTCCCCTTCCTTGCACAGGTGCCACGAGACGGAGGAAGAGGTTCAAGTCTCCGAGGGCAGGGAGGACCAAGACTTGTACTACACTCtcagaaacaatgatAACGAACGCCTGGCGATTGCTAGACAGCGAATCCCATATCGACTTGGTCGAGTAGTTGATGAATGGCTACTCGACAAAGGGCGGCAGCTCACTATCTTCAATAGCCAAACCACTATAAAAATCGGGGGGAAGGACAGGGGCCGCCCGTTCCAGGGCCAGCTCTCTGGCCTGTACTACAACGGGCTGAAGGTGCTCAACATGGCGGCCGAGAACGAACCCAACATCAAGATCGAGGGCAGCGTGCGGCTGGTGGGGGAGTCGCCGTCGTCCATGACCACCGAGTCCAGCGCCACAGCCAACCAGTCCGAGACGTCCACCTCCATCATGGAGATCACCACCACCACGGCATCCAGCCGGAGAGGGAAGCCGCCCACCCGAGAGCCACAGGTTCGCAGCTTTTCTGTCTTTCACAGTTGTGGGACGTTTTTAATGACTTCGCAATGGGGGTGCTGGTCTGATGGTGGAGAGCTCTGCAGACCTGGTCCAGAGAGATGGTTCAGCCTGGCTGAGGCTCCCCCGAGGGGCTCCTGGGAGCTGGGGAGAGTGCCACACCCCGGGGGCCAGTTGAGCGACCGGTCAATAGGGAGGTCCTGCAGAAGCACAGCAGTTGTCCAAGGCAGGGTCCATGTTTAG

Function

GO: NA

KEGG:

id description
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001917 True 762 mRNA 0.59 3 19507997 19511624

Neighbor

gene id symbol gene type direction distance location
AMCG00001916 LOC104952680,LOC108443646 coding downstream 47154 19459280 ~ 19460843 (-)
AMCG00001913 NA coding downstream 184336 19311038 ~ 19323661 (-)
AMCG00001914 NA coding downstream 208128 19287278 ~ 19299869 (-)
AMCG00001910 fbxo11,LOC107550041,LOC107749363,LOC108430631,LOC108413220,LOC107728720 coding downstream 321877 19177265 ~ 19186120 (-)
AMCG00001912 kcnk12,LOC106515821 coding downstream 376918 19127262 ~ 19131079 (-)
AMCG00001918 NA coding upstream 3957 19515581 ~ 19519632 (-)
AMCG00001919 NA coding upstream 60575 19572199 ~ 19573651 (-)
AMCG00001927 NA coding upstream 109762 19621386 ~ 19634914 (-)
AMCG00001928 nrxn1 coding upstream 136128 19647752 ~ 19667440 (-)
AMCG00001929 NA coding upstream 164724 19676348 ~ 19677155 (-)
G161302 NA non-coding downstream 50255 19455124 ~ 19457742 (-)
G161206 NA non-coding downstream 423021 19084112 ~ 19084976 (-)
G161165 cript,LOC107582781,LOC107728714 non-coding downstream 606279 18899147 ~ 18901718 (-)
G161161 NA non-coding downstream 620429 18886294 ~ 18887568 (-)
G161039 NA non-coding downstream 1203899 18301084 ~ 18304098 (-)
G161346 LOC107739892 non-coding upstream 580489 20092113 ~ 20093345 (-)
G161391 NA non-coding upstream 714033 20225657 ~ 20225919 (-)
G161475 NA non-coding upstream 926844 20438468 ~ 20438673 (-)
G161471 if3ei,eif3l,LOC106576896 non-coding upstream 964304 20475928 ~ 20478231 (-)
G161480 NA non-coding upstream 966684 20478308 ~ 20478719 (-)
G161153 NA other downstream 657113 18835782 ~ 18850884 (-)
G160925 mta3,LOC105904126,LOC106516625,LOC107749351 other downstream 1597144 17908754 ~ 17910853 (-)
AMCG00001863 LOC105006094,LOC104951035,LOC101160874,LOC106578938 other downstream 1642618 17860139 ~ 17865379 (-)
AMCG00001865 NA other downstream 1697900 17808018 ~ 17810097 (-)
G160817 NA other downstream 1976007 17530866 ~ 17531990 (-)
AMCG00001945 NA other upstream 828801 20340425 ~ 20347505 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_04927483_04988999 NRXN1A, NRXN1 coding CI01000063 null 4927483 ~ 4988999 (+)