AMCG00001920


Basic Information

Item Value
gene id AMCG00001920
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 19260178 ~ 19269659 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001920
GGGGAGGGAGGCTGTTCCGCTCAGTGCACTGCGCCCCGCCGCCTCCAGCACAGTCTCCTCTCCGGTGGCGCAGCTCGTCTCTTACCGCGGAGCCGCTTCTCTGCCATTTTGGCAGATTCGTCAGAGCAGCCGGGATGGCCGTGTCCGGCGTGTGCTGAGTCCACCGAGCCGGTCCGGCCCACAGACGCGTATTCCCCCCAGCAGAGCCTGCAGCGCAGAGCCAGCGAGACGCCCCACGGGCTCCATGGACCACCCCGACTGGGTGACGTTTGAGGACGACAGCGCTGCCTGCCGGCCGCCCGATGCCACCGCCAGCGCCGGCGTCCCCAAACCCAACGTGCTGAAGCTGACGCTGCCGGCCATGCACGACCTCCCCGGCAGCTCCCTGCTGTGCGGCAGCCCCCTCACCTCGCCCCTGCTGTTCTCCAACGGGGGCCCGTGTGTCCCCAGCAACACCCCGCTGTGCACGCCGGTCCGGGAGCCCCCCGGCTTCTTCTGGAGCTTCTCCTCGTCCTCTGGcacccccctgccctccccgGCGCAGGATGGCAGCCGGCCAGGACTCCAGACCCCGCAGCCCACCGGTCCCCAGTGCCTGTTCTCCTCCGTCGGACCCAGTCCGTTCCCTGCCTTCCAGGACAACAGCGGCCACTCCAACCCCTTCTGGAGCGACGGCCGCAGGTCGGGCAGCTCCTCCTCTGACTCCGATTCCGGCGTGCCGCGCTTCTCCATCAGGAAGGATGGGCCCGAGCCGCCCGGAGACCCGATCCAGCGCTCCTACACCTACCTCTGCCAGAAGCTGGAGAGCCTGCGGGCCGAGGAGGACGAGGAGCCGGGCGGCACTGCCCCCGTGCAGCGGAGCCAGGAGAGCGGGGGGCCGTCCTTCATCCCCAGGGGGCTGTTCCGCAGCCAGAGTAGGGACGGCTGGCACCTGATGCTCCGGATCCCTGAGAAGAAGAACCGCATGTCGTCCCGCCAGTGGGGCCCCATCTACCTGCGTCTGCGGCCGGGCGGGGTGCTGCAGATGTTCTACGAGAGAGGCCTGGAGTCGCCCTTCAAAGAGCTGCAGCTGCACCCGTACTGCCGCCTGTCGCCGCCCAAGCTGGAGAGCTGCAGTGAGCTCGGCAAGATCCACACGGTGAAGATCGAGCATGCGGCGTACGCCGAGCGGAGGCGCTACCACCCCAAGGCGGAGGTGGTCCACGAggtgcaggagctggagcagctgcTGAAGTTCGGCACCACGGACCACGCCGACTTCTCGGACCTGCTGGCCACGgtggaggaggagctgctgcGGCTGCCCCCCCACTCACAACAGAGGAGGCACTACGAGGAGCaggagctgcagctgcacatcCAGGACAGCTTCTGGGCCCGGCTGGGCACGGACGGGACGCTGCTGGAGCGGGCCGCCCTGACCCAGGTCTACTGCCTGGCCTTCGTCAACAGCCCGGCCGAGTGCTTCCTCGCCCTGAACGACCTGCAGCTGCTCCGCCGGGACCCCAGCTACGGCCCGGAGGAGGGAGAGGCCTGGATGGAGATCGGCGACTGCTTCTTCCACAAGAGCGTCAACGAGGACGAGTTCCGGCGGTCGCGGCTCGTCCGGTTCACTCCGCCCGACGCCTGCAGAGTGGAGCTCATGCGCTTCAAGACTCTGTCCGTCGCGGCGGAGCTGCCCTTCTCGGTGAAGGCGGTGGTGACGGTGCAGGGGGCCTACGTCGAGCTGCAGGTCTTCCTCAGCATGTCACCCGCCTTCGCAGTCTGCGGCCCCCCGGACCCGGGGCAGGTGTGCGACAACGTCGTCCTGCAGGTGTCGGTTCCGGGAGACTGGGTCAAGGTGTCGCGCACCGTGGCTCTGCTCAGGCAGAAGTCCCTGAAGGCCCGGATGAACAGGAACGCGTGCCTGGGCTCCGTCGGCGCGGCGGACACCGAGCCGGTGATGCAGGTGACCGTGGGCGCCGTCAAGTACGAGAGCGCCTTCGGGGCCATCGTGTGGAGAGTGGAGCGGCTGCCGACCAAAAACACAGTGCGCCTCTTGGGGGATGGACACTGCAGGCGGGGGTGTCTGACCAGTGTCTCTCGTGGGGGACTGTCGCTCAGCGTGTCTCCTCTCCCCACAGCCCCAGACCAGCCGCACTGCCTGTCCTGTAAGCTGGAGCTGGGCTCAGACCAGGAGATCCCGGACGACTGGCGCCCCTTCGTGACTGTGGAGTTCGACGTGGCCGAGGCGGCCGTCTCCGGGACCCGGGTGAAGTCTCTGGGAACCGAGAGCGATATTCAGCCCCAGAAGCACATCGTCTCCAAGGCACACTACCACTGCCAGGTGCAGATCGAGAAGAAGTGGATCCAGAGTTACGAGGGCGACTCGAGGAGACGGGCCGACTGTCTGACCCAGTGATGCTCTGGGAGGGAGGAGTTTTCTTTACTGGATGACAAGTAAATCTACCTGCTTTACCAGCCGACTCCTTTAGCCGTTCCGCCCATCAATATGCACAGCCTTCTCATCTGAAACACCGAGTAAAGGCGGTGACCCCGCGCTTGTTGCAAACCGCAGCGCTGCATTTCCAGACCGGACAAATGAAAGGACGACGATCGCGCCGGTGCGAGGGCCGCAGCCCCCGTGTCTCGCTCTAACTGTGCCGTAccactgttttctgtgttgtacAGAATTGCAAAGACTCAGCCCTGGTGTTCCCCGGAAGAAGCCAGGATGTCTGCTTCAGTCACCACGGACGCTGTGGCTGCTGGGGCACCTAAACTGTTTCGTGTTTTTGGCAGCTTCTGACACAGCTGCAGCTTAATACCCCGGCATCTGGCCTCGTCCCTCATCGAGTCTTTTCATCAAATGTGATGTAGACTGGCCAGCCTCTGAAAATGGACATCTGGACACTTGCTGCCCGTCGTCGTGTCCGCCTGCCACACAACGCAGCACTGCGCAGAAACAGGACAAATGAGACACAACAGCCATTGTAACCGGTGTAGAAAGATGCTTTCTGTAACAGGGCTGTTAAGATAGTGATGCAGAAtaagtgcttttttgttttttaaagtcaatcaataaactaaacaaaaatccACATACTATCAAGACTGGTAATGGTTTTCCAGGAATAAGACGACTGGAACGATATTCCAACACTGGCTTTGAATTGCAGCGTTATACTCATCATCTGTTTCTCCAGTCACAGTTTCATAGTTTAaatagtacatttaaatttgaGATTTTGTTCATCAGTTGCTGCTCTTCGTACACTGATTACTGATGTGCAGAGCGAATAGTGTGATCCCACCTGAAGTACGCAATAAAACCCAACACCTGGAGGCAATAGACACATTCTGCCCTCGGTGTCGGCTCTGTTGTGTGATGTTTCAGGCTCGGGGGGTACACGGTGGTCGGGTTTAACAAAGATTGCCAGATGAAGGAAACCATTTGCATCtggaaatgaattaaaataaaacttgcttTGTTTCATTATCTGCAAACTTGCTAAGTCCCTGTTGAAATGCCTTTCTCGTGGCTCAAATCTGTCAGTGACATCAAAAGAGTAATGTGCTTCAGATGACTTTCAGACTCTTGCAGCTCATGTCTACCCCAGCAGCGGCTCTTGGGCAGTCTGTGGGTGGCTGGGAGGGGAATAGGTTGAATCGGGTTAGAAGAACTGTTTCAaagtttcattttgaaaagcgaGTGAGTGTTGTAAGTCTAGAGCTCACACTGCTCGGTCTGTGATTGGCCGTTACTCAATTGGCGCTGTCTGGCCCAGGAGCGGCGTCTCGGAGCCGGGCCAGGTGACTGTCCGGACCCCACGGCAGCCAAGCTCGGAGGAACCGTTGCGGTGAGCAGAGCAGAACCCATCCTCTCTGCGCCTGGACCCACAGGGCTGCCTCCTCTCTGTGCTCCTGATCCTGCAGTGTGCTGAACAGTGATGATTCAAAGattatctataataataataaactagaCTTTAAAGGATCTGAAGATGCTTTGCatgtgtccttgttttttgcatgctatatagagatatatattatagttaGGGTCGTGTTCAGGTTAATCTCAGAGGTAGTTTGCAACTGAAGCAGCAGTAGCAGAGTTTAGGTGAGGCAGCAGTTTGCGAGAGGAATATGCAAATATGAGCCCGACGAGGAAAAGACAAAGGGCTGCTTTCACGGACACAGATTAGTAACTAGACTGTTATTTTACATAGAAAGTGCGGTAGATGCGGCTTACAAATGTCATAAGGGATTGTGTGATAAATATGAGGCTGTGACACATTTGTCCCCTACAAGAGT

Function

GO: NA

KEGG:

id description
K20067 STON1_2; stonin-1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001920 True 4296 mRNA 0.59 4 19260178 19269659

Neighbor

gene id symbol gene type direction distance location
AMCG00001924 NA coding upstream 4865 19254800 ~ 19255313 (+)
AMCG00001923 NA coding upstream 5484 19244816 ~ 19254694 (+)
AMCG00001922 LOC108441706 coding upstream 21768 19231809 ~ 19238410 (+)
AMCG00001907 NA coding upstream 84329 19166236 ~ 19175849 (+)
AMCG00001909 NA coding upstream 152133 19089099 ~ 19108045 (+)
AMCG00001921 NA coding downstream 7034 19276693 ~ 19285887 (+)
AMCG00001915 NA coding downstream 172331 19441990 ~ 19442314 (+)
AMCG00001926 NA coding downstream 680793 19950452 ~ 19969912 (+)
AMCG00001937 NA coding downstream 812054 20081713 ~ 20087467 (+)
AMCG00001936 LOC107739892 coding downstream 819978 20089637 ~ 20096591 (+)
G161170 NA non-coding upstream 336506 18923449 ~ 18923672 (+)
G160985 NA non-coding upstream 1041147 18218764 ~ 18219031 (+)
G160943 NA non-coding upstream 1220804 18038704 ~ 18039374 (+)
G160939 NA non-coding upstream 1230362 18024196 ~ 18029816 (+)
G160910 NA non-coding upstream 1343124 17916795 ~ 17917054 (+)
G161282 NA non-coding downstream 185429 19455088 ~ 19457752 (+)
G161285 NA non-coding downstream 238584 19508243 ~ 19508522 (+)
G161392 NA non-coding downstream 966518 20236177 ~ 20236391 (+)
G161469 NA non-coding downstream 1205012 20474671 ~ 20474889 (+)
AMCG00001889 cript,LOC107582781,LOC107728714 other upstream 358460 18899337 ~ 18901718 (+)
AMCG00001880 NA other upstream 586363 18663995 ~ 18673815 (+)
AMCG00001883 NA other upstream 1043040 18210009 ~ 18217138 (+)
AMCG00001881 NA other upstream 1050787 18187902 ~ 18209391 (+)
AMCG00001846 NA other upstream 1797244 17417351 ~ 17462934 (+)

Expression


Co-expression Network