AMCG00001925 (nrxn1a,LOC108430659)


Basic Information

Item Value
gene id AMCG00001925
gene name nrxn1a,LOC108430659
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 19772079 ~ 19772822 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001925
ATGGTGCTTGCAATGAGGCACGGGGCTCACCTCATCTGGATGGGCCTGCTGGTGTGCTGTTTGGTGGACCTGGGTGCCAGCTTGGAGTTCACAGGAGCGGAGGGGCAGTGGGCCAGGTTTCCCATGTGGAATGCGTGTTGTGAGAGCGAGATGAGCTTCAACATGAAAACCAAGAGCTCCCACGGACTCCTGGTCTACTTCGACGACGAGGGCTTCTGCGACTTCCTGGAGCTGCTCATCCACAACGGGAAGCTCAGCCTGCGCTTCTCGATCTTCTGCGCCGAGCCGGCCACCGTGCTCTCGGACACGGCGGTCAACGACAGCATCTGGCACTCCGTGGTCGTCAGGAGGAACTTCAAAAACACCACCCTGGTCGTGGACAGAGAGATAAAGTGGGTGGAGGTGAAATCGAAACGCAGGGATATGACTGTGTTTAGTAACTTGTACCTGGGCGGGATCCCGCCGGAATTACGGTCCGTGGCGCTGCGGCTCACGTCTGCCTCGGTGAAGGACCAGGTTCCCTTTAAAGGGTGGATAACGAACCTGAAAGTCAACGGCACAGATCCGGTGCTCGTTAGCAGCGAAGGAATCAACAGTGATCCCTGTGGGAAGGACAACATGTGTCTGAATGGAGGGGTGTGCAGCGTGTTCAACGACGAGGCGATCTGTGACTGTTCGCAGACTGGCTACCAGGGCAAGGACTGCAGTGAAGGTAAGATGTTTGGATTAATCTTCTACAACTGA

Function

symbol description
nrxn1a Predicted to enable metal ion binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in caudal vein plexus; diencephalon; hindbrain; spinal cord; and telencephalon. Human ortholog(s) of this gene implicated in Pitt-Hopkins-like syndrome 2. Orthologous to human NRXN1 (neurexin 1).

NR:

description
PREDICTED: neurexin-1a isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001925 True 744 mRNA 0.56 1 19772079 19772822

Neighbor

gene id symbol gene type direction distance location
AMCG00001929 NA coding downstream 94924 19676348 ~ 19677155 (-)
AMCG00001928 nrxn1 coding downstream 104639 19647752 ~ 19667440 (-)
AMCG00001927 NA coding downstream 137165 19621386 ~ 19634914 (-)
AMCG00001919 NA coding downstream 198428 19572199 ~ 19573651 (-)
AMCG00001918 NA coding downstream 252447 19515581 ~ 19519632 (-)
AMCG00001930 NA coding upstream 288057 20060879 ~ 20081368 (-)
AMCG00001939 NA coding upstream 324730 20097552 ~ 20099147 (-)
AMCG00001938 LOC106611227,LOC106589746 coding upstream 328472 20101294 ~ 20130994 (-)
AMCG00001933 NA coding upstream 490582 20263404 ~ 20283502 (-)
AMCG00001943 tarbp1 coding upstream 575170 20347992 ~ 20362451 (-)
G161302 NA non-coding downstream 314337 19455124 ~ 19457742 (-)
G161206 NA non-coding downstream 687103 19084112 ~ 19084976 (-)
G161165 cript,LOC107582781,LOC107728714 non-coding downstream 870361 18899147 ~ 18901718 (-)
G161161 NA non-coding downstream 884511 18886294 ~ 18887568 (-)
G161039 NA non-coding downstream 1467981 18301084 ~ 18304098 (-)
G161346 LOC107739892 non-coding upstream 319291 20092113 ~ 20093345 (-)
G161391 NA non-coding upstream 452835 20225657 ~ 20225919 (-)
G161475 NA non-coding upstream 665646 20438468 ~ 20438673 (-)
G161471 if3ei,eif3l,LOC106576896 non-coding upstream 703106 20475928 ~ 20478231 (-)
G161480 NA non-coding upstream 705486 20478308 ~ 20478719 (-)
G161153 NA other downstream 921195 18835782 ~ 18850884 (-)
G160925 mta3,LOC105904126,LOC106516625,LOC107749351 other downstream 1861226 17908754 ~ 17910853 (-)
AMCG00001863 LOC105006094,LOC104951035,LOC101160874,LOC106578938 other downstream 1906700 17860139 ~ 17865379 (-)
AMCG00001865 NA other downstream 1961982 17808018 ~ 17810097 (-)
G160817 NA other downstream 2240089 17530866 ~ 17531990 (-)
AMCG00001945 NA other upstream 567603 20340425 ~ 20347505 (-)

Expression


Co-expression Network