AMCG00001930


Basic Information

Item Value
gene id AMCG00001930
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 20060879 ~ 20081368 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001930
TTTCGACGCCGCTGCGGCTCTGCTGGTGATCGTGTTTTTCCCGGTTTTGAGTGAAGGCACTTGATCCACAGAGGTCCGCTATGGACACGACGTGCGGTTCTTTCTCCCGCTGCAAGAGATATGAGACAAAACGAGTGTAGTTGAGTGAAACAGCCTGGATCCCCGGACATGTGGCAGAAGGACCGTTACTGGCGCGGGTTGTGCTTTTGATCTTCAGTGCACTGTCGGAATATCACTTTGAAACTTTTACTGCCTTATGTATCAATACAAGCACATGCATGAAGAATAGCTCGAGATTCAGAAGTGAGGCATCCATTAGCACACGGTAGTGCACGGTAGTGTGAGCTTGTTCTTGCAGTGGTGCATCTACACAAAAGTGCACCAAGAGAGGGTAACCGATATTGCACTGTGATCTGGGTATAGCTGTGAAGTGCGGGGCTGTCGGGCCTCCGGGTTGGTTGATGAGCAGTATACCGTAGAGCAGTTCTTCGCTGCACCCGTTTTGGACCGTCTCTGCCCGGCGCCATGGACTTCACCGAGGCGTTTTCCGACACCTGCTCGGCCGCCGGGCTCGCCGCCAGGCAGGGGGACGCGGGGCTGCTGAAGCGGCTCATCCGGAAAGGCTACAGCCTCGACATCTCGGACAACCGGGGCTGGATCCCCATCCATGAGGCGGCGTTCAGCGACTCGCCGCGGTGCCTGGGCCTGCTGCTGCGGGCGGAGGAGTCGGGCAGCTACGTGAACTCCCGGACCTACGAGGGCGAGACGCCGCTGCACCTGGCGGCCATGCGGGGGAGCTGGCGCTGTGTGGCGCTGCTGCTGCGGGCGGGGGCCGACCCCAACCAGGTGACCAACGAGGAGACCACCCCCCTCTTCATAGCTGTGCAGAACGGACACCCAGATGTGGTACAGATGCTGCTGAGCCATGGGGCCGAGGTCAACGGGTCGCAGTCCTTGTGCGGGTGGAACGCGCTTCACCAGGCTGCCTTCCGGGGTCTGTCCGAGATCACGAGGATCCTGCTGGACAGAGGGGTGGACAAGGAGACCCAGGATGACTTTGGCATCACCCCTCTCTTCATCGCGGCGCAGTACGGACAGCTGGACTGTCTGAAGATGCTGGCGGACAGCGGCGCCAATGTGAACTGCCAGGCGAGGGACCGTGCCACGCCCCTGTTCATCGCAGCGCAGGAGGGGCACACCGACTGTGTGCAAACGCTGCTGTCCTGCGGCGCCGACCCCAACCTCTACTGCAACGACGAGGCCTGGCAGCTGCCCATCCATGCCGCCGCCCAGCACGGCAGGACCAGCATCCTGGAGCTGCTGGTGCCCGTGACGGACCGCGCCTGCGACACGGGTAAGGGCAAGGTGAGCCCGGTGTACTCGGCCGTGCTGGGGGGGCGCGCCGAGAGTCTGAGCGTCCTGCTGAGAGAGGGATACAGCCCCAACGCCCAGGAGTGCCTGGTGTTCGAGATCTCATCGCCCCTCTGCTTGGCCATTTCTGAAAGTCGTATGGAGATggctctgctgctgctgagctCGGGGGTCCGCGTCCTGCCGCAGCACTACGGCTCGTGCCTGCAGGAGGAGCACCTGTCTCTCTTCAGGGCGCTGCTGGAGCAGGGCGACCCCCTGCCCTCGGGGGAACCCCTGCAGGACTTCCTCCGGGCCAGCCTGTCCGCCCAGCACCGCTACCTGGAGTGGCTCCCCCAGCTGCTGCTGACTGGGTTCGACCCCATGCTCCTCCTCGACGCTGCGTGGATTGCATCCGTAACGGACGATGTGCTTAATTTTGCTCTGGAGTTCACTAATTGGAAGCGAATTCCTCCAGCTGTAAAGCAGATCCTGTCCAGCCATGCCGAAAAGTCCACCTGGGTCCAGCGCAAACATTTCGACTCTCTACCGCCCCTGAGCCACCTCTGCCGGCTGGCCGTGCGGGCCCACCTGCGCCCCGAGACCCTGCGCTCGGACCACGCCGTGCGCCACCTGCCCCTGCCCACCTGCCTGCAGGACTACCTGCTGTACCGCGACGTCCGCCAGGCGTACGGCAGCCCGGCCCGGGAGTCCGAGCGGCACCGTGACTAGGCCGAGGCTCGAGGGACGGGCAGCGTTGGGGTGATTGTGAGATTTTAATAATCGCGTTCTGCTCACGATCCGGATTCTGTAATAGGacatgatgtatatatttaatctgtggGTTATTGACAGAAGTGTATAACATtgtgaatgtaaatgtgttcaagcaaatctgtgtgttgtgtgtttttcttttcttttatttgtactttttattttttgttgaagCTGGTTTctacttttaaatgcaattgagccagaattaaatattgaaacatttctgtaaagGAGCTGGAGAACTGGTAAATCCTCCAATATTTAACCAGGCTATTTTACACTTCATTTCACAGACTATCTTTACTCTCA

Function

GO: NA

KEGG:

id description
K10325 ASB3; ankyrin repeat and SOCS box protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001930 True 2439 mRNA 0.59 9 20060879 20081368

Neighbor

gene id symbol gene type direction distance location
AMCG00001925 nrxn1a,LOC108430659 coding downstream 288057 19772079 ~ 19772822 (-)
AMCG00001929 NA coding downstream 383724 19676348 ~ 19677155 (-)
AMCG00001928 nrxn1 coding downstream 393439 19647752 ~ 19667440 (-)
AMCG00001927 NA coding downstream 425965 19621386 ~ 19634914 (-)
AMCG00001919 NA coding downstream 487228 19572199 ~ 19573651 (-)
AMCG00001939 NA coding upstream 16184 20097552 ~ 20099147 (-)
AMCG00001938 LOC106611227,LOC106589746 coding upstream 19926 20101294 ~ 20130994 (-)
AMCG00001933 NA coding upstream 182036 20263404 ~ 20283502 (-)
AMCG00001943 tarbp1 coding upstream 266624 20347992 ~ 20362451 (-)
AMCG00001948 NA coding upstream 281940 20363308 ~ 20392326 (-)
G161302 NA non-coding downstream 603137 19455124 ~ 19457742 (-)
G161206 NA non-coding downstream 975903 19084112 ~ 19084976 (-)
G161165 cript,LOC107582781,LOC107728714 non-coding downstream 1159161 18899147 ~ 18901718 (-)
G161161 NA non-coding downstream 1173311 18886294 ~ 18887568 (-)
G161039 NA non-coding downstream 1756781 18301084 ~ 18304098 (-)
G161346 LOC107739892 non-coding upstream 10745 20092113 ~ 20093345 (-)
G161391 NA non-coding upstream 144289 20225657 ~ 20225919 (-)
G161475 NA non-coding upstream 357100 20438468 ~ 20438673 (-)
G161471 if3ei,eif3l,LOC106576896 non-coding upstream 394560 20475928 ~ 20478231 (-)
G161480 NA non-coding upstream 396940 20478308 ~ 20478719 (-)
G161153 NA other downstream 1209995 18835782 ~ 18850884 (-)
G160925 mta3,LOC105904126,LOC106516625,LOC107749351 other downstream 2150026 17908754 ~ 17910853 (-)
AMCG00001863 LOC105006094,LOC104951035,LOC101160874,LOC106578938 other downstream 2195500 17860139 ~ 17865379 (-)
AMCG00001865 NA other downstream 2250782 17808018 ~ 17810097 (-)
G160817 NA other downstream 2528889 17530866 ~ 17531990 (-)
AMCG00001945 NA other upstream 259057 20340425 ~ 20347505 (-)

Expression


Co-expression Network