AMCG00001945


Basic Information

Item Value
gene id AMCG00001945
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 20340425 ~ 20347505 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001945
ATGGACCTCACCGAGTGGGTCTCCGGAGAGTCGGGCGACTACAGCAACGACCCGTTTACCAGCAGCGTCAGACCCGCCAGCCTGAACAGAACCGACAGCGGGCCGGCCGGCTCTCCCCGGACACGCCTGGTCCTGGAGGTCGTGATGGTGCTGATGGCGCTGGGCGCGGTGACAGGTGAGCTCGGGGATGCTGAGGGGGACAGGCTGGGCTTGGCAGTGACCGTGGTCCTGGTTGTGTCCTCAGGGAACATCCTGGTGATCGTGATCGTGGCCGCGACCAAAGCCTTCCACTGCGTGACGTCGGTGCTGCTCATCAACCTGGCAGTCAGCGACCTGCTGGTGGGCATCGGGGTCATGCCCTTCATCGCCCTGTCGCTGCTGTACGACCGCTGGGGCGACTGCACGGTGAGTCCCGCTGCCCCCCCACGGTCACTGCCACCGCTGCCCCCCCCGCAGTCCCTATCACCGCTGCCCCCGTCACTGTCACTGCTGCCCCCCTGCGGTCCCCATCACTGCTGCTGTGTATGTGCTTTGTTGACGAGGCGGTTTGTGTCTCCGTGTGCTTGTGGGCTGCAGGACCTGTGTCTCTACGTCGGCTACACGTCCTCAGTGTACTGCACGGCATCGGTGCTGACCCTCGCTGCCATCGCTCTGGACCGGTACCACGCCATCGTCGACTGCCTGCACTACAGCTCCCAGACCACGGTGTGGAGGACCGTGGCGGCCGTGATCTGGATCTGGCTGCAGGCCGCCGTCACCAGCTGCCCGCCACTGCTAGGCTGGAGTAACCTGGACTACATCGGGCCCATGTACAACTGTGCCGTGGACTggtccagcagccccagctacACAGGCTTCGTGGCGGCCTTGTCCTTCCTGCTGCCAGCCGGTGTCATGGTCTTCTGCTACGTCAAGATTGTGGGCGTGGCCAGGGGTCACGCCCGGCGCATCCACGACCTGGAGGAGCACCTGCAGCGGAGCCAGCCAGGGCGGCGGGGCCCGGGGGAGAAGCCCACCTTCGCCAGGCTGATCTACTGCGTCAGCGGCCTGGGCCTCCCCGAGGGGCCCGCCCCCCCGCCCTGTCGCCCGCACGGGCTCCTGGGGCGGACCGGCCTGCATGGCCGGGAGCAACTGGGCTTGCTGCGCCTCTTCCTTGTCATCTTCGCCTTCTTCTGCTGCTGGCTGCCCTACATCACCGTGGCGCTGGTGCAGGCCGTTGAGGCCGCCACGTCCCCCCGGCCCTCGCGGCTTCCCCCCAGCGCCGTCACCTTGGCCTACTGGCTGGCACTGCTCAACTCCGACATCAACCCGCTGCTGTACGCGCTGCTGAGCCGGCGGTTCCAGAGGGCGCTGCGGAGTCTGCGCCGCCGCCTGCAGGCCAGGGTAGGCCAGTCGCTGCGGGAGCCCCCTGCCTGGGCAGAGCAGCACCCCCGCGCCACCCAGCACACCGCGGTGTCCAGCCTCCGCACCGCCTCCTCCGACCGCGCCGCCGGCTCCTCGCTCTTCTCCCTGGACTCCTGCGCCCCCGAGGGCTACCGGGACCACCGGGACCACCTGAGCACCTTCCTGCCCGGCGGCCTACCCCCCAGCAGGGAGAGTGCGCGGGGCGGGGGGGAGCCTCTGGCCTCACAGCTCCTGCAGGTGCCCTCTGCCCCTGTGGATAGAGAGCGGATCCCCGTGTCGGCCTCGGCGGGAGAGACGAGGGCCACGTTCTTCTACGGGCAGATTACAGTGAAGGTGGAACACGTCAGGTCCTGA
>TU203216
GTCATCTTCGCCTTCTTCTGCTGCTGGCTGCCCTACATCACCGTGGCGCTGGTGCAGGCCGTTGAGGCCGCCACGTCCCCCCGGCCCTCGCGGCTTCCCCCCAGCGCCGTCACCTTGGCCTACTGGCTGGCACTGCTCAACTCCGACATCAACCCGCTGCTGTACGCGCTGCTGAGCCGGCGGTTCCAGAGGGCGCTGCGGAGTCTGCGCCGCCGCCTGCAGGCCAGGGTAGGCCAGTCGCTGCGGGAGCCCCCTGCCTGGGCAGAGCAGCACCCCCGCGCCACCCAGCACACCGCGGTGTCCAGCCTCCGCACCGCCTCCTCCGACCGCGCCGCCGGCTCCTCGCTCTTCTCCCTGGACTCCTGCGCCCCCGAGGGCTACCGGGACCACCGGGACCACCTGAGCACCTTCCTGCCCGGCGGCCTACCCCCCAGCAGGGAGAGTGCGCGGGGCGGGGGGGAGCCTCTGGCCTCACAGCTCCTGCAGGTGCCCTCTGCCCCTGTGGATAGAGAGCGGATCCCCGTGTCGGCCTCGGCGGGAGAGACGAGGGCCACGTTCTTCTACGGGCAGATTACAGTGAAGGTGGAACACGTCAGGTCCTGACCCCCCGTCCCAGTTGTCCCTCCCCAGGTTCAGTGTCTTTGCACCGCAGCAGGGCTGTCATCCCTCTGTGCCCAGTCTGTGCCCGGCCTCTCTCAGAGCACTGTGAGCCAGAGAACTAATACCTGAAACCCCTGCCATTGCTCCACTTTAAGTATTATTATCTGCAGGCACTATTTCTAGATGTCTATCCCTGTGTGTAAGTTACACACATCTGTTGacttatttactttaattaagagAGCTTGACTAATCCGACCTGGATGATTCCAGCATCGAGGCTGTTCATCACCTCTTACCTTACATCAAGGCGACGAAGGGGGCTTTTCCATGAAAGCAAGGGCTGCGGCCCACGAGCAGGACAAACCAGGCCCGGACCCAGGCCCAGGCCGTAACTGGTCTTCAGACTGGAGCACTCAGAGTGACGGACCCTTCCTCTGCCTGGACCCAGCGACCTCTCACGGTCAATAAAGAGACGGAGCtttgctgtttatttgtattctgtcaAGATTTATTGAATGTATCGCTCTATTTACAGTCATCTGATAAAATCTCTGGTGaaagtatacaaaaataaaatgtacaaagtaTATCTGTGATCAAGGTAACAAAGCTCAGATTCAATGATCTCTCAGACAGTAAGACGGCACTTGATTGTTCCCTCACGTTAAAGCTCCCCCCGCGCAGCCCCCCGAGGCTCGGCCAGACCCCCTCCACACGCTGGGCAGGGCCTCCAGGACACTAGCACCATTAGTACTTCACAcccaattaattaaatcaatgaatcaatATTTTAGCTGAAATTATGGGCACCTCTTCATTGGATACATTTGACTTAAAATAAGCACTTTATAGAGAAATAAGTACATAAGAAAGTCACAGTTTAACAGGAGATATGAACGCGCCTCCCTCAGCTAGTTGGGTTTCAGACGCAGATGGGGGTCTGAAGACCCTGTAGGGCAGGGGTCCCatccctggccctggaggagcagCGCTGGGAACCCCTGCTGCAGGGCATGAAGCCCACTGTAAACATCGGTCCGACCCTCCCGTCGAGGCACTGTGGACAGACGTGTCCCAATCCCTCGCTGTCCTGCTGCGTCAGTCCTGCTGCGGAGGCCAGTGTCCTGGTCTTTTATcagaggattttaaaatgcaaaacccaGATGTATTTGCAAGCGTTTAAGGCCAGTTAtaaagcaaaaggaaaaaagaaaagccaaagGTTTCATCGCACACAAGCCTACAGCACAGTTTTAGTTTAAAGTATTCAAATCCTTCACATGAAATTTTTCTGTGATTAAATTAGTTTCATACAAACAGAAGTAACCGAGTTAGGACGGGAGGTGTGTAACGTTTTGACCGTTTTCATCTCACTCAGCTGGACTCTTTCTGCCCTGGGCCGAATCGACCGAACTCTGAAAAAGACGTCCTTGACAAATAAGCACAGTTTAATGATCAATTTgttacaacaacaactaaacaggTGTGAATCCTTTAAACTACAACTGCACGTCCACTGCAGACTCACAGCGTTGTGGTCCTGTTTGAAACACTGCGCTGGGCAGACTGGAAGACGGAGTCACAGCCGCTGGTCTGCCAGTGAGAACTGGGACCAGTCTCTGTATGACAACCCCGAAGAGAGCTCCCAGTGTAAACCACTACATAAACCACTGACACACAAGAAAAGTGTCAAATATTGCGTTTGTTTGTGCAGCAGATTATAATagacagaaataatacataaccAGATTTTATAGTTTAAAGCTGGTGAGATGGATCAAATTCCTTACTATTCCTTAATATTCACACAAATTGACAATAGCGGAAATGTGCAAgcgtatatatgtatgaatgtttttatttaaccaaaACTAAGACACATGGATGGCATCTTCAAGATCCTCACAGACAAAATGtactattgttattttaataaaacattcaataaaaaaaatatcccttAAAGTCCTCACAAAAGATGTACACGTGGTAATGTCTAAATAGAActattcaattaattcatttctCCAACCTATTTTTAATGTGATAATTAtgttgcatttcagtgtatAAATCATTCCTTACAAAGGCTTACTGTTACTTCTAGCAATAATTCCAGAGGAATACAATATAATGATTTATTGCCATTGTAGAATGACAATGGAGAACAGGGTTGGATGTTTCTTTTGCAGAAGGCAGTGAGAGCGATTATTGCAGCTCCGCGTTACCTTTGCTTCACGAGCACTGAGACGAGCAAGAGCTGATTTCTAATCACCGgcagaataaaattaaaaaactgagTCTCTAAAGTCATTTTACTTTCATGAAAATTGCTGAGAACATAATTCGGCAGACGGCCGATTGTTGTGAGAAAACAGACATGCGTTTCCCCAAAGAAAACAAGCGTGCCTTTATAGCAACGACAATACATTCAACAAGATACCGCAAAACAATATAGCGCTGTCTCGGCGGAGCGGAGAGGAGCAGGTGCACAAACTGCCTGCGCCAACCATCGTGCCCTCCGGACACAGCGCTGGCACGGCAGGGCCTCACAGTGTAAGACGCACAAGCGGAGAAAACAATCCCACGCAGACGAACTCTTTGCCGTCAGCAAAACAGCTCTCTTCCAAATGGGCGAACCTCCCCCTGCTGTCGCTTTGAGGGagaaatattgcttttaaatcacCATCTCCTCGAGGACGGTCAGCTCTTACACACGTTTTGGcatcttttaattataatttttaaccTTTGTATCGTCCAACGCTGAAGGGAGCGAGCGCCCTGTACGATTGGACACATTGATCAGAGTCTAATAAGCTCATTGAAAGGGAGGTCAGGTCTTTCAGCGCAGGGGGCTGCAGCGGAGGCTCAGTTTAGTTAAAGTGCTGATGGGTTATTGACACTCTCACTATTCCCATGAAAGTGCAGGATGTAAACTACACACGGAGCCGAGCCGCTGCCAGGGGACGGGACCCGTTCTCAGCACACTGGAGCAGTGACCTGTCCAGCCACATCCGACATCCCCACGTGCAGGAATCAGACTCCATATCGATGGCAATTCCTGCCCTGACCGGGCCCCACACCACCCGGCCCTGCGGAAGACCGGCCTCACGCTCAGACAGCGCCGGTCCCCAGAGACGCGTCTCCTGCTGCGACGGTTCCCCTCACACCTTGAGTCCGTACCCTCGTAATATCTGACAAAACCCAGAGCTGTGCAAAAAAAAGCACGTTTACTTTCCAGTTttaccacaataataataataataataataataataatacaaatcattaaaaagtctCCCATGTGTAGAAGGAGTTCCTCTTTGGATCGAGAAGGCGACACTGTGCTCAACCCAGCAATGAATTCGACAGACCAGGTCAAAAAAAAGAGTTCACAGATCCCTTGTCTGAAGCCCCATTCTGGCACCTCTGAGCTCCAGCTGTCTCCTCGTGACCTTCTGTGAAGAACTGGGAACCAGAGCCCGTGTCGGACGCTCGCTCGGGATGCAGGCTTTACGTTATGGAATCTGAATTCGAGCGGTGCATCCATGAACACCCCAGAGAAGCCCGGTGTCAAGATATTGAAAAATCAGGCAAGACGACAACATGCAGCAGTGTGTAGATTTCAGACAGCAGATGGTATacgctgtgtgtatatatatctataacacgcacgcgcacacgcacacaaagaagtatataaaaataataataaataatagaaaaactCTACAGAGATTTACAACACAATGATACCTGtgcttttttgctttgttttatggtATAAACGTCACACAGTGCTGTGAGGGGTGGAGCGGCCGGTGGGTCAGTGGGTGAAGGTGGACATGGAGGTCCGGCCCCGGCGGCTCCAGCCCAGCCCACCCCCAACCTCCGCGGCCTCGGCCGGCTCCTCCTTGCGGCGCCGGCGCAGTCGGGCCAGCAGTGCCAGCAGGGTCTGGTCCCACTCCtcgggcagcagcagcagcaggaagcCCAGGCAGATGATCAGCACGGCGATGACGCGCACGCTGTTGAAGCTGATGTCACTGGTGTAGTGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001945 False 1758 mRNA 0.68 2 20344739 20347505
TU203216 True 4665 lncRNA 0.50 2 20340425 20345341

Neighbor

gene id symbol gene type direction distance location
AMCG00001933 NA coding downstream 56923 20263404 ~ 20283502 (-)
AMCG00001938 LOC106611227,LOC106589746 coding downstream 209431 20101294 ~ 20130994 (-)
AMCG00001939 NA coding downstream 241278 20097552 ~ 20099147 (-)
AMCG00001930 NA coding downstream 259057 20060879 ~ 20081368 (-)
AMCG00001925 nrxn1a,LOC108430659 coding downstream 567603 19772079 ~ 19772822 (-)
AMCG00001943 tarbp1 coding upstream 487 20347992 ~ 20362451 (-)
AMCG00001948 NA coding upstream 15803 20363308 ~ 20392326 (-)
AMCG00001947 NA coding upstream 58826 20406331 ~ 20411457 (-)
AMCG00001949 smoc2 coding upstream 95872 20443377 ~ 20468386 (-)
G161391 NA non-coding downstream 114506 20225657 ~ 20225919 (-)
G161346 LOC107739892 non-coding downstream 247080 20092113 ~ 20093345 (-)
G161302 NA non-coding downstream 882683 19455124 ~ 19457742 (-)
G161206 NA non-coding downstream 1255449 19084112 ~ 19084976 (-)
G161165 cript,LOC107582781,LOC107728714 non-coding downstream 1438707 18899147 ~ 18901718 (-)
G161475 NA non-coding upstream 90963 20438468 ~ 20438673 (-)
G161471 if3ei,eif3l,LOC106576896 non-coding upstream 128423 20475928 ~ 20478231 (-)
G161480 NA non-coding upstream 130803 20478308 ~ 20478719 (-)
G161153 NA other downstream 1489541 18835782 ~ 18850884 (-)
G160925 mta3,LOC105904126,LOC106516625,LOC107749351 other downstream 2429572 17908754 ~ 17910853 (-)
AMCG00001863 LOC105006094,LOC104951035,LOC101160874,LOC106578938 other downstream 2475046 17860139 ~ 17865379 (-)
AMCG00001865 NA other downstream 2530328 17808018 ~ 17810097 (-)
G160817 NA other downstream 2808435 17530866 ~ 17531990 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012340 slc35f4 coding NC_007128.7 CM002901.2 44502707 ~ 44584938 (-)
grasscarp (Ctenopharyngodon idella) CI01000012_03280454_03281289 NA coding CI01000012 null 3279871 ~ 3281289 (-)
rainbow trout (Oncorhynchus mykiss) G1886918 NA non-coding NC_048587.1 CM023241.2 60173174 ~ 60174069 (-)