AMCG00001948


Basic Information

Item Value
gene id AMCG00001948
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 20363308 ~ 20392326 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001948
ATGAAGAGAATGGGCATAATTAGGAGTGCAGGTGAGAGCGATGCTGCAGTGAGAAgtgaggggagaggagagaagagcgAGGAGGACAATGCTGGCCATGCTCAATCCCAGCGGCCAAATGTAGCCAGACAATGGCAGTGTGACTGGAGGAGAGGCGGCGCCATGGTGAGGCGGGCGAGACAGCAGGACCTGGCCTGGGATGGAGATAATTTGCCCATCAACAGCTGGCCTTCCCTTAACCCTGACCTGCTACTGACCGGCAGTCGCTGTGGACAGTACAGTAGTGTCGTGTCTTTGCTTAATGACTATTCTCCATCGGCCTGGCTGTGCAGTCGCCACCTGGTGGAGATTCTTTGTGTGCCTGGGATCCTGCCTGTGCCCCGTGTGAACCTCAGCCTCAGCCTGGAGATGACTGAGAGCCCCTGTATGTATCGGTGGAGGTGTAGGCAGTTCACTAGCAGGTCAGTGACCCGCACTCACAGCACCCCGCTGTCACTATGCTTTCTAAAGGGCATGAGGCAGTGTAGGCAGTGCCAGGCTGGCGGCGCCCCCTCTTGGCTGGGCTGCAGGTGTGGGAGTGACAGGCCGCCCCCGGGTCCGGCGCTGAGTGGGCTCTTCCGATGGGCGGGCCGCGGTGTCTCGCAGGGCTCCGGCTGGCGCAGGCGCAGAGGCGCTTCATTCGCGGTCGCGGAGAGACCTGCAGGAGAGGAGCGCCCTGCCGGAGTTACTTCGCTCTCAGGCGGCTTTAACGCGTCCTTCATTTGGATGAGATGCACAGCGCCGGGCTGCTCTCCGCAGCGCCTCGGGGGTGACGGTGACACAGGACTGTGTGTGGGTGCTGAGGACAGAGCTGAGATGGCCAAGCAGGAGCGCAGCGTGTGTGTCCTGCTGCCTGACAAGGAGCGGCTGGACATCAACAATGAACATATCTTTATGGACCTGGAGCAGAAGCTGACCAAGTACTTCCCCAAGGAATGGAAGAAAGACGCCAGTAGGGGCTCGGCCCGGCCTGGTCCTCCGCTGGTGGCCTGCCTGAGGGTGCAGTACTACGTGGAGAACGGCAGGCTGATCAGcgACCAGAAGGCCCGGTGGCTGTACTACTGCGATCTGCGCCAGCGCGTGCGGGGCTCCCGGTGCCGGCATCGTGAGGAGGCCTACTTCCTGCTGGCAGCCTATGCCCTGCAGGCCGATCTGGGAGATCACAGCGACCGGGAGCACAAGGGGCAGTACTTCCAGCCGCAGGACTACTTCCCTCCCTGGGTGGGTGCTGCACCGGGGCGTGGGGGGGCGCTCTGGAGTGCACAGGGCAGGGCGATCCTGTGCGATGGCAGTGTAACAGCTGTGCTCTCCCCCCAGATCATTGCCAAGAGGGGCTGTGGGTACATCCTGCAGCACGCCCCGGCCATGCACCGCGAGCAGAGGGGCCGCCCGGCCCGGGAGGCGCTGCTGCTGTTCATCAGAGAGGCCTGCCGGCTGGAGGACGTGCCCGTGCACTTCTACAGGCTGCACAAGGACAAGAATGACGAGCACAGTGCCATCCTGCTGGGTCTGACCCTGCGAGGAATGTACATTTATCAGGAGCTGAACAGTGATCGGCAGTTGCTGTACGAATTCCCCTGGGCCAACGTGGGCAGACTGACATTCCTGGGAAAGAAGTTTGAGATCCAGCCGGACGGCTTGCCTTCAGCACGGAAGCTGGTGTACTACACAGGCTCCCCGTCCCGTTCCCGCCACCTGCTGCAGCACCTGAGCAACAGCCACCGCCTCTACCTCAACATCCAGCCAGCTCTGCGGCAACTGCGCCAGGCGGAGGAGGCCGAGGAGAAGAACCGTTACCACGAGTCCTACATCAGTGACTCTCTGGAGGTGCTCCTGGAGCCGCTGCAGCACCCGGGCAGCGGGGGAGGTGACCTGGGGGGCAGCCCACGCCTCTGGCGTCGCTCCGCCAGCAGCCACGGCAGCTCTGGCATCGAGGCCGGCCCCCAGCAGCGCCTGTCTGTGGAGATGTCGGTGGATGCTCCCTTCTCTGCCACGAAGTCCTTCAGCTCTGGTGACAGCCACGGCAGCTCCCACACCTCGGGCATCGACACGGGCAGCAAGACGCGCCCCGAGGAGGACTGGCATGACGACGAGATGCAGCTGTTGGTGGACGGCCCTCAGGAGCTGTGTGTGGACGACCCAGTGGAGATGATGCGATTGGCCGAGCTCATGGAGGGTGTGTCAGTGGAGCCTCGTGGGATTGGCCAGGGGGAGCACTGGAAAGACGCCAGCCCTGTGAGTTGTGTGGATCCTCCCGCAGTGCTGCGCAGTGCGGACTCCTTGGAGCAGGTGTGCCATTGGAAGGGGTGGAGCAGTGTGGACCGACACAGCCGGAGTTTGGACGATGTGAGGCTGTGCTCCCCCGCCACCCCGCTGGAAGCAAGCCTGCACACAGACGCCTCCCAGAGCTACACCTTCGGCCTGCGCGCACCCACGGACCAGAGCCACAGCACCAGCTCCTGCACGGCCGACGGCCCGGGCAAGCCCTCCTTCTACGGTAAGAGGTCGCTGAACAGCCTGTCTCTGGACCTGCTGGGCGACGAGCTGCTGGAGTTCATCCTGTGAGGGGGGCTGCTCTCAGAGATGGACCACAGGGCAGCACTTTACCTGTGGAGGAGGGCCTGTGGGGACACTGCGGGGACACAAGCCCAGGCAGGAGGGACCCACTGCCCAGGGAGAGGACACGGAAACGCTGATCCACACTggagtgcaggagagagagagagagagagagagagcacctCTGCTCACACAAGGACACGGCCACATCCCTCAGAGCAGCTGGGCTCTCGATCCACAGAGTACTGCTATAtgagacttttattttaaaaagtgatgtATAATCCTCAGAAATTGCCTGGAGCAACATGTGGGGTCTGCAAAATGAAATGGTGTTCCCAGAACATAACGTGAAAAGTGATTCAGAAGTgttcttgtattgttttgtgtaatgCGTGTCAGTCAGTATTACTTGTTCAGTAGCTGTGAGCTGGCGGCCCCTTGGACCCGGACACATGATCAGTCTCTTCCTGGTCGTCGGCCACCTGAGACCCTAATTTATAAGCCACTCTGCCGCTTGCCTCTGTACCAATCAGTGTCCGTGGCTTGGCTATCacttgtgtgtattattattaatttaaacctAGCAACCAAATTGAACTGATTCAAAGAATTTGCCAACAATGTTGATCTTCTTCGTGCCAGTATTAATTGTAGACCTTGAATATGTtttacacacatgtatttttacactttgcaTTTTTCTATATAAAAGTCCTTGTACCTTTTGGTTGTCTCGGATGTTCTTGACATGCTCTCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001948 True 3360 mRNA 0.60 18 20363308 20392326

Neighbor

gene id symbol gene type direction distance location
AMCG00001943 tarbp1 coding downstream 857 20347992 ~ 20362451 (-)
AMCG00001933 NA coding downstream 79806 20263404 ~ 20283502 (-)
AMCG00001938 LOC106611227,LOC106589746 coding downstream 232314 20101294 ~ 20130994 (-)
AMCG00001939 NA coding downstream 264161 20097552 ~ 20099147 (-)
AMCG00001930 NA coding downstream 281940 20060879 ~ 20081368 (-)
AMCG00001947 NA coding upstream 14005 20406331 ~ 20411457 (-)
AMCG00001949 smoc2 coding upstream 51051 20443377 ~ 20468386 (-)
G161391 NA non-coding downstream 137389 20225657 ~ 20225919 (-)
G161346 LOC107739892 non-coding downstream 269963 20092113 ~ 20093345 (-)
G161302 NA non-coding downstream 905566 19455124 ~ 19457742 (-)
G161206 NA non-coding downstream 1278332 19084112 ~ 19084976 (-)
G161165 cript,LOC107582781,LOC107728714 non-coding downstream 1461590 18899147 ~ 18901718 (-)
G161475 NA non-coding upstream 46142 20438468 ~ 20438673 (-)
G161471 if3ei,eif3l,LOC106576896 non-coding upstream 83602 20475928 ~ 20478231 (-)
G161480 NA non-coding upstream 85982 20478308 ~ 20478719 (-)
AMCG00001945 NA other downstream 15803 20340425 ~ 20347505 (-)
G161153 NA other downstream 1512424 18835782 ~ 18850884 (-)
G160925 mta3,LOC105904126,LOC106516625,LOC107749351 other downstream 2452455 17908754 ~ 17910853 (-)
AMCG00001863 LOC105006094,LOC104951035,LOC101160874,LOC106578938 other downstream 2497929 17860139 ~ 17865379 (-)
AMCG00001865 NA other downstream 2553211 17808018 ~ 17810097 (-)

Expression


Co-expression Network