G157602


Basic Information

Item Value
gene id G157602
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 3316486 ~ 3319933 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU198476
GGACTGCTCGTTTTAAAATCATAGGTCTGCGTAAAGACACTTTCATAGAGTTCCTTAGGAAACACACTTAGATGTCTACATCCAGTAATGCCTTATTATTTGTCTTACAGCAGACTATGAGAAGGCCAGAAGAAAAGCAGCCAAAGCAGAGGAGGAGTCAGATCTGCAGAGTGACACTGATGATCTGCAGAGGAATAAACGATCTAGAAAaCGTAATAAAAGATACGATTGCGAATCCTCAGACAGTGAGGAAGGTGCACCGgtaggaagaaaaaataactcaGTTCCTGTCCACCACCACAACCAACACTGACACCATGTccaccaacaccaccaccaactcGGACATGGTCACGTGGATCACCACCACTTATTCAGCCACCACCACCATTGATTCCAAGGTCACCCAGAAGAACATCACTTGAGCAAGTGACTGCAAGGGACCGTCACCTTGTGACCTCCATAGAAGAGATCAAATGTGAGCTGGCTATTTTGAAGAGGATGGTGGCAAATATAGCAAAGCAGTTCAACAGTGGTTCTGAGGTGGCACTTCCAGATGATGTCTCCTTGCCACTGAAGACGTTTGAACATGTGGACAGCCTTGAACAACTTTTAGAAGAAATGAGCTACAAGGATCAAATGAtaatattcattataaacagTGTGATAGCAGATAAAAGTTATTTGATATACCAGTAGAAAAAtcctacaaataataaaaagagcaataactttaataaacaaattatatatggctaacaaaaacataacctttaacagttaaatgtaaatgcattcaCACTTAGCATTGCAAAATGTTAACTATACTATACCTATCACTGTTAGGGATAAATCTACACTTAccaaaaaacatgttctttatGGGAGCACATGTAAGTAGCATTGCTGTCTTAAGTTTAAAGCCATACTTAATTTCTGCTTTAGTGCAAACAGTGGATATTTTTGGGGGGTATATCAGGACTATACGGTTTGCTCTGCAACTCGGGTTCAATTGTGGCTGACTAGACGCTTGCAGACTTGGGCTGGGGGCAAGGAGACCAGGTTTTCCAAATTGggtccaaaataataataattaaaaaaactatataagGACTAACACATCACAGCACTTGCAGTCTTGCAAGAATGCTTATAGCAACAGGTCATTCTAGCTCTTAACTTAACCCCAACTATTcttctttttgattttgtcagaCTGCCTTCCTTGGATTAATTGGTGGGGTGGATGTTCCTACAGCCGTCCGCAGAATTATGGCTGCCTTAATTGGTAATGAATTAGCAACCAAATTCAATTGGAAGGGACTTGGAATCAAAAGATCGTTTTATGACCTCAAACTTCGAAAAGTGATTGCTGATGCTGTATGTCGTAATCCAttgacaaaaacagcacaggaCTCTGAAATTGACATGGCAGCCATGCTGTGGCTGAGAAATGCACGAGATCGGGCAGGCGGAAGGAAGCAGCGCCTCTTGCAAGCAATGAGAAAACAGCAGgagcaataacaaaataaagtaaaaacctTCACCCACATACAAAGCCTGCTAATGATGGTTACCATTTTTGCTTGTCAGAGAGAACCCATGATTTGTAGGGGAGTTTGTAATTTCTGAGTAGGTGAGCtaatgggtcaaagtttttatttggtctggacctatgttatttttatgtattattcttgtttgtttagcaCACACCCttttcagggtgacttacagttttcacaaaatgttagatttattatttattattaataatttagatTGTTACAGCTTTGGGTAGTAaaattctattttaaatgtaatttgtgttgttaaatgttctacatatgaaaacaaaaatcccatatatgtttaatatatggtAAATAGTATGATTGTTATAATtctattcttcttcttattattattattattattgttattcttattaCAATTTGTATACAGTGCTTTGATGAaagggaggaaaagagagagtcTAAGGAACAAAGAGCAGTGAAGTCCagtctgttctttttttgtgttgtcttcAGCCCTTGAATctcttttttgtgtatttttcttcagttgctatgtaaataaatacaggcgGAAGCCTTTACCACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198476 True 2124 lncRNA 0.38 4 3316486 3319933

Neighbor

gene id symbol gene type direction distance location
AMCG00001410 NA coding upstream 394207 2921972 ~ 2922279 (+)
AMCG00001406 NA coding upstream 659484 2618236 ~ 2657002 (+)
AMCG00001403 tmem178,LOC107691291,LOC105026821,LOC107751123,LOC107570655,LOC106564792 coding upstream 923152 2380244 ~ 2393334 (+)
AMCG00001407 NA coding upstream 1097983 2212251 ~ 2218503 (+)
AMCG00001400 NA coding upstream 1211941 2076753 ~ 2104545 (+)
AMCG00001415 NA coding downstream 99471 3419404 ~ 3420432 (+)
AMCG00001422 NA coding downstream 203405 3523338 ~ 3530730 (+)
AMCG00001420 egln1,LOC107737236,LOC107556149,LOC105893867,LOC107572057 coding downstream 226939 3546872 ~ 3554580 (+)
AMCG00001421 ero1b coding downstream 244587 3564520 ~ 3587440 (+)
AMCG00001439 NA coding downstream 288382 3608315 ~ 3648819 (+)
G157584 NA non-coding upstream 40871 3225589 ~ 3275615 (+)
G157583 NA non-coding upstream 95236 3217077 ~ 3221250 (+)
G157579 NA non-coding upstream 126783 3187623 ~ 3189703 (+)
G157577 LOC100846954 non-coding upstream 131332 3184721 ~ 3185154 (+)
G157562 NA non-coding upstream 184770 3131223 ~ 3131716 (+)
G157632 NA non-coding downstream 74312 3394245 ~ 3401255 (+)
G157635 NA non-coding downstream 85215 3405148 ~ 3406402 (+)
G157640 NA non-coding downstream 116412 3436345 ~ 3437663 (+)
G157668 NA non-coding downstream 169130 3489063 ~ 3493169 (+)
G157783 NA non-coding downstream 561909 3881842 ~ 3917073 (+)
G157369 NA other upstream 1315558 1971881 ~ 2000928 (+)
AMCG00001392 NA other upstream 1621500 1691676 ~ 1694986 (+)
G157196 NA other upstream 2727186 587975 ~ 589300 (+)
AMCG00001436 gng4 other downstream 428621 3748554 ~ 3765362 (+)
G157781 NA other downstream 555276 3875209 ~ 3880779 (+)
AMCG00001433 NA other downstream 702864 4022797 ~ 4023910 (+)
AMCG00001430 srf other downstream 725423 4045356 ~ 4062333 (+)
AMCG00001457 NA other downstream 1303534 4623467 ~ 4652000 (+)

Expression


Co-expression Network