G157783


Basic Information

Item Value
gene id G157783
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 3881842 ~ 3917073 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU198690
tgtatatatatataNNNtgtgaaacacacacaaacaaactatgTATGTAAtggaggagaggcagggagCAGGTTATTTTTAGCTCCGTTTAGTAAGCTAGTTTAACTTGGACGAGGTGAACCGAAAGATAATCATTTTTCTGACCTCAGCAACAATCGAAGAGATGGCACGTATTTGGAGCAGTGTTCTTCAGAGCCAGGCCTCGAGGTCCTGCTTGCTTCTGATTCGCACTTCATTCAGCTCGGGCCCTTTGAAGAGGTCACGGTTACTCACTGAACCAATCAAACGCTCTCCGAAAGTGTTTTCCAGGCACCTCTCACCGTACCCGTGTGAGGCCCCGAAGCTCTGGATTTGAACACTGCTTTGGCGTAACTCTAGATGTTTTAGTCTGacgctttatttttcttcagtcttCTTTTCAGCTTTTTGTACCGTGTGGATtatgtgtagttttttttttctggtttcagTTCTGTGAGGTACGGTGCTTTTGTGAAATTGCTTTGAATGCTTTTGTATGTGTTCTCACTTTGAAGGCGAATAAACCCTTGTCCCCTATGTGGATctcctatctatctatctgtctatctatacgTACATGTATACGGCATGCGCAAGACAGTGTTTGAAGACCACGTTCCAGGAAGTGGAAGTTCTCGTCTGTTTTTATTGCATGCTGCTGTGCAGAGTAGCCTGCTGCGCTGTTGTTTGAGACACTCGGTTTGTGGAATCtggggttgttttgtttgcatcaTGACAAAATGCAGCATACATTGAGATGGGGGTTTGTACGAGGTGTATTGTCATAAGAGAGACGTGTCCTGTGTTAATAAAGTGTATTTCAGTCAGTCTA
>TU198691
atatatatatatatatatatatatatatgtgaaacacacacaaacaaactatgTATGTAAtggaggagaggcagggagCAGGTTATTTTTAGCTCCGTTTAGTAAGCTAGTTTAACTTGGACGAGGTGAACCGAAAGATAATCATTTTTCTGACCTCAGCAACAATCGAAGAGATGGCACGTATTTGGAGCAGTGTTCTTCAGAGCCAGGCCTCGAGGTCCTGCTTGCTTCTGATTCGCACTTCATTCAGCTCGGGCCCTTTGAAGAGGTCACGGTTACTCACTGAACCAATCAAACGCTCTCCGAAAGTGTTTTCCAGGCACCTCTCACCGTACCCGTGTGAGGCCCCGAAGCTCTGGATTTGAACACTGCTTTGGCGTAACTCTAGATGTTTTAGTCTGacgctttatttttcttcagtcttCTTTTCAGCTTTTTGTACCGTGTGGATtatgtgtagttttttttttctggtttcagTTCTGTGAGGTACGGTGCTTTTGTGAAATTGCTTTGAATGCTTTTGTATGTGTTCTCACTTTGAAGGCGAATAAACCCTTGTCCCCTATGTGGATctcctatctatctatctgtctatctatacgTACATGTATACGGCATGCGCAAGACAGTGTTTGAAGACCACGTTCCAGGAAGTGGAAGTTCTCGTCTGTTTTTATTGCATGCTGCTGTGCAGAGTAGCCTGCTGCGCTGTTGTTTGAGACACTCGGTTTGTGGAATCtggggttgttttgtttgcatcaTGACAAAATGCAGCATACATTGAGATGGGGGTTTGTACGAGGTGTATTGTCATAAGAGAGACGTGTCCTGTGTTAATAAAGTGTATTTCAGTCAGTCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198690 False 853 lncRNA 0.43 2 3881842 3917073
TU198691 True 863 lncRNA 0.43 2 3886798 3917073

Neighbor

gene id symbol gene type direction distance location
AMCG00001437 eif4a3,LOC107702040 coding upstream 110107 3766101 ~ 3771735 (+)
AMCG00001438 NA coding upstream 140443 3676483 ~ 3741399 (+)
AMCG00001439 NA coding upstream 233023 3608315 ~ 3648819 (+)
AMCG00001421 ero1b coding upstream 294402 3564520 ~ 3587440 (+)
AMCG00001420 egln1,LOC107737236,LOC107556149,LOC105893867,LOC107572057 coding upstream 327262 3546872 ~ 3554580 (+)
AMCG00001429 NA coding downstream 69649 3986722 ~ 4013882 (+)
AMCG00001431 NA coding downstream 165965 4083038 ~ 4095370 (+)
AMCG00001432 ttbk1,LOC105907619 coding downstream 194997 4112070 ~ 4121193 (+)
AMCG00001435 NA coding downstream 219103 4136176 ~ 4153348 (+)
AMCG00001434 NA coding downstream 245600 4162673 ~ 4166553 (+)
G157668 NA non-coding upstream 388673 3489063 ~ 3493169 (+)
G157640 NA non-coding upstream 444179 3436345 ~ 3437663 (+)
G157635 NA non-coding upstream 475440 3405148 ~ 3406402 (+)
G157632 NA non-coding upstream 480587 3394245 ~ 3401255 (+)
G157602 NA non-coding upstream 561909 3316486 ~ 3319933 (+)
G157834 NA non-coding downstream 150015 4067088 ~ 4067627 (+)
G157966 NA non-coding downstream 779481 4696554 ~ 4702861 (+)
G157975 NA non-coding downstream 796822 4713895 ~ 4714160 (+)
G157985 NA non-coding downstream 955622 4872695 ~ 4875144 (+)
G158014 NA non-coding downstream 971041 4888114 ~ 4888352 (+)
G157781 NA other upstream 1063 3875209 ~ 3880779 (+)
AMCG00001436 gng4 other upstream 116480 3748554 ~ 3765362 (+)
G157369 NA other upstream 1880914 1971881 ~ 2000928 (+)
AMCG00001392 NA other upstream 2186856 1691676 ~ 1694986 (+)
G157196 NA other upstream 3292542 587975 ~ 589300 (+)
AMCG00001433 NA other downstream 105724 4022797 ~ 4023910 (+)
AMCG00001430 srf other downstream 128283 4045356 ~ 4062333 (+)
AMCG00001457 NA other downstream 706394 4623467 ~ 4652000 (+)
AMCG00001480 NA other downstream 1448932 5366005 ~ 5383064 (+)
AMCG00001486 NA other downstream 1676607 5593680 ~ 5633349 (+)

Expression


Co-expression Network