G158332


Basic Information

Item Value
gene id G158332
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 6396920 ~ 6398188 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU199346
TTTGTTGCATTGCTTTGTGGGATATCTAGTTATCTAGGTTATAGAATGCAGGCATAATTTACTGCCTTAATCCTTCGgtttcctctttaaaaaaatctgcactGCTTAGAAACATATTTAACTACACCCACAAATTCCTTTCTTAagttattctttaaaatatacccTACACTTTAAATTATACCTAAAGTTTGTTTGTGGTACCTCACATACTACAGTGTAACATTGCCCACACACTTCAACTGGCAAGCAAAAACATGAAATTGTAAGATTggttcttttagttttttgcacaCAGTGAAAGCGCTTTGCTTATCTGAAGCTTCAAAATTTGTATAAGGGATTCAATTAAGATGAAAAAAGTATGATTTTATCAAACGTTTCTTGTGTCGTATATAGTGAGTCACTTCCTAAAAAATGATAGCTGCCTGAATGCTAAAAGCAAATAGctattttttaacatacaaatTCATTATTCACTGACAACAGATAATGATCTGAACACCAAATGATACATTTTGCACTGCactcacattaaaaaataaaaaaatgttgataaataaaatcttattgCCATATCAGGCACATTCATATGACTAAATCAAAGTACTTCGATGAGTGTTTGACATTATAGAATAATTTTATCAGTTTTCATTCTGATCATCATACTTGTTTTGACATGACATCTCCATTCTGTTTCACCCCAATTGATTTTTGTGATAGATCGTAATAAATGTCAGTAGTTATTTAGATCgggttttaaatgaaatgtcatAACTCCTGGGGAAAGCAATCTCCTGTGCTTTAATCAACACCTTTTAATTCATAAGTCTTAAATAAAGATGTGACGAATTCCACATCAATTTCAGCCACACCAAATGTCACACATTTTAACCCCTGATTCTACCACAGTCAGTAATATGACAgttttaaaaaatttaaatcaaacagTTATTCTCCTTACCTAACAAAAATGTCAAAGACTTTATTTCTTCTCAAGCTGATAGCATGGTGCACGTTTGGCCTAATGTCTTTCAGCATTTAAAAGCAGCAAATGTAAAgtccacattattattaataataatatttattataatgtttaaaaataattctgagCAATTCATAATtcacaaacacttaaaaaatattgactttttttgtaAACTGCTTGTCATTACTCAGATTGGTGCCTGTGTCagtttattcataattaaaaacattaaaaaattgaaaataatactaatagaaTGACGCAAGTGTGACTTTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199346 True 1269 lncRNA 0.30 1 6396920 6398188

Neighbor

gene id symbol gene type direction distance location
AMCG00001511 NA coding upstream 13712 6381967 ~ 6383208 (+)
AMCG00001510 NA coding upstream 143699 6225995 ~ 6253221 (+)
AMCG00001501 NA coding upstream 198669 6194262 ~ 6198251 (+)
AMCG00001500 NA coding upstream 204948 6185200 ~ 6191972 (+)
AMCG00001497 LOC107578948,LOC107682299 coding upstream 310580 6085600 ~ 6086340 (+)
AMCG00001512 NA coding downstream 143485 6541673 ~ 6545924 (+)
AMCG00001507 pgbd5,LOC107743535,LOC107552948,LOC107725485,LOC106589661,LOC106610742 coding downstream 165620 6563808 ~ 6591290 (+)
AMCG00001515 LOC107580738 coding downstream 337909 6736097 ~ 6741940 (+)
AMCG00001517 abcb10 coding downstream 345517 6743705 ~ 6752893 (+)
AMCG00001518 NA coding downstream 355543 6753731 ~ 6770900 (+)
G158230 NA non-coding upstream 504674 5892046 ~ 5892246 (+)
G158184 NA non-coding upstream 662361 5708092 ~ 5734559 (+)
G158104 NA non-coding upstream 973828 5421471 ~ 5423092 (+)
G158089 NA non-coding upstream 1081684 5313068 ~ 5315236 (+)
G158014 NA non-coding upstream 1508568 4888114 ~ 4888352 (+)
G158337 NA non-coding downstream 10833 6409021 ~ 6410557 (+)
G158342 NA non-coding downstream 23812 6422000 ~ 6422235 (+)
G158364 NA non-coding downstream 111106 6509294 ~ 6509630 (+)
G158435 NA non-coding downstream 389216 6787404 ~ 6788972 (+)
G158539 NA non-coding downstream 629999 7028187 ~ 7036066 (+)
AMCG00001509 sf3b5 other upstream 960 6394103 ~ 6395960 (+)
AMCG00001493 NA other upstream 495922 5889836 ~ 5900998 (+)
AMCG00001489 NA other upstream 525490 5869975 ~ 5871430 (+)
AMCG00001486 NA other upstream 763571 5593680 ~ 5633349 (+)
AMCG00001480 NA other upstream 1013856 5366005 ~ 5383064 (+)
G158478 NA other downstream 476580 6874768 ~ 6876578 (+)
G158537 NA other downstream 625200 7023388 ~ 7028141 (+)
AMCG00001550 NA other downstream 1273126 7671314 ~ 7679783 (+)
G158672 NA other downstream 1338327 7736515 ~ 7737890 (+)
G158676 NA other downstream 1348493 7746681 ~ 7746980 (+)

Expression


Co-expression Network