G158342


Basic Information

Item Value
gene id G158342
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 6422000 ~ 6422235 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU199361
cagaaccagcattcactttttcagcaatttgagctgcagtatctcgtctgttggatcggaccacacgggccagccttcgctccccacgtgcatcaatgagccttggccgcccatgaccctgtcgccggttcaccgcttttccttccttggaccacttttgataggtactgaccactgcagaccaggaacaccccacaagagctgcagttttggagatgctctgagcCAGTCGTCta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199361 True 236 lncRNA 0.55 1 6422000 6422235

Neighbor

gene id symbol gene type direction distance location
AMCG00001511 NA coding upstream 38792 6381967 ~ 6383208 (+)
AMCG00001510 NA coding upstream 168779 6225995 ~ 6253221 (+)
AMCG00001501 NA coding upstream 223749 6194262 ~ 6198251 (+)
AMCG00001500 NA coding upstream 230028 6185200 ~ 6191972 (+)
AMCG00001497 LOC107578948,LOC107682299 coding upstream 335660 6085600 ~ 6086340 (+)
AMCG00001512 NA coding downstream 119438 6541673 ~ 6545924 (+)
AMCG00001507 pgbd5,LOC107743535,LOC107552948,LOC107725485,LOC106589661,LOC106610742 coding downstream 141573 6563808 ~ 6591290 (+)
AMCG00001515 LOC107580738 coding downstream 313862 6736097 ~ 6741940 (+)
AMCG00001517 abcb10 coding downstream 321470 6743705 ~ 6752893 (+)
AMCG00001518 NA coding downstream 331496 6753731 ~ 6770900 (+)
G158337 NA non-coding upstream 11443 6409021 ~ 6410557 (+)
G158332 NA non-coding upstream 23812 6396920 ~ 6398188 (+)
G158230 NA non-coding upstream 529754 5892046 ~ 5892246 (+)
G158184 NA non-coding upstream 687441 5708092 ~ 5734559 (+)
G158104 NA non-coding upstream 998908 5421471 ~ 5423092 (+)
G158364 NA non-coding downstream 87059 6509294 ~ 6509630 (+)
G158435 NA non-coding downstream 365169 6787404 ~ 6788972 (+)
G158539 NA non-coding downstream 605952 7028187 ~ 7036066 (+)
G158548 NA non-coding downstream 633613 7055848 ~ 7056061 (+)
G158555 NA non-coding downstream 736015 7158250 ~ 7160609 (+)
AMCG00001509 sf3b5 other upstream 26040 6394103 ~ 6395960 (+)
AMCG00001493 NA other upstream 521002 5889836 ~ 5900998 (+)
AMCG00001489 NA other upstream 550570 5869975 ~ 5871430 (+)
AMCG00001486 NA other upstream 788651 5593680 ~ 5633349 (+)
AMCG00001480 NA other upstream 1038936 5366005 ~ 5383064 (+)
G158478 NA other downstream 452533 6874768 ~ 6876578 (+)
G158537 NA other downstream 601153 7023388 ~ 7028141 (+)
AMCG00001550 NA other downstream 1249079 7671314 ~ 7679783 (+)
G158672 NA other downstream 1314280 7736515 ~ 7737890 (+)
G158676 NA other downstream 1324446 7746681 ~ 7746980 (+)

Expression


Co-expression Network