G158435


Basic Information

Item Value
gene id G158435
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 6787404 ~ 6788972 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU199470
TCGGAAATGTGCGTCGGGGTCAGCTTAGTGTTTGGACTCCAGCTGGGAAAGGGACCCATTGTTAAATTGACACCTGAACCGAGAGCTGCTGGAACACGATCCCCTCGCAGGTCCCTGGGAATATTCACACCGTGAGGCAGAGCACAGGAATAGAAGCACAAAGCGTGGAGGCAGTGGGGGCTGGCAACACCGAGCGCACACGGAGACGTCACGGCCTCATAGCGAGAGCCTGGCGAATGTGAAACAATATATGTGACACCTGCTTCCAATGCTGAACCCATTCCTTCATACCATGACATAATGTTCATTGTGTGACCCTGTGGCAGACACTCGGACTAAGGCCTGGACCGAAGCACAACTTTGTAGGGGAGAGTGGCATCTCGCAATACAGTTGGGTACAAGTTAGTGAGTTGGGGATTATGGGTAGGTTAAAGGTTTGGTATTGGCCTTGGACTTTGTTTGCAAGATGAGACATTTTCCCTTTGGTAATAGATTTGATGCAGTTATGAATTAACtcattttatgtatatgttCACCTATTTTCTCTATTAATCGccccccccacatacacacacaaaacacattttattctatTGGACTaagtaaatgaatacatgttaaatcaaaatgtatatgGAACTGTTTTTCAGATTCcaagaatacaaaaaaggaGTAAATTTACTTTAGTCTGGACACATTTGAACTGACTTCATTTATATTCTGAATAAATTGTAGTTTATGTTGTCACATCCCTAAACAGAGATGACTGTGTAATTGAAAACAGTAAGAACACAGTCAAATCCACCAAAGGGCTGCCAGATGACAGGACAGTGGCACACTTCTCGCTGTGGGGGTTTCTTTCAGCACACACAACCCCCTTGAGCAATGTCATAATCTCATACAGCAACTGTACCTCACAGCTCTGCTCTCTCCAGCCCACAGTCAGTTCAGTAGCAGACAGATTTTGTAACCTGATCCCCTGTCCTGGGTTCATCGAGGCGGGGGGTGGGCTTGGGGAACTGGCCACCAAAGTCTTTGGTGGCTGCCAGAGTTATTTTCCACTCCTGAAAAGTCTTCTAATCTGCATTTGGGAACCTGCCACATCTCATTAATCAGACTATTTGACCTTGAAGCTGTGCGGAAAGGGAAATCTCACCGCATCCCCCTGTGCCTGCTGTTTCTTTCCTGTCCCCGAAACTCAGTCGACTGAATGGGGCTCTGGAATCcagatgtatgacctcacttactgtacttacctgtgtaaattggaagttgtaaaatgtattatattttgaatggttctgtttaatgtaaatttgaatttgtaatgtttgatgcctttgtactgaactgtatttttgcactttgtattgcacttatgttgtaagtcaccctggataatggcgtctgccaagaaataatacaaaaaaaaaaaaaaaaaaaaaaaataataataataataataataatctggcaCTACTGCTCTCGATTCACTACCTGTTTTTGCCTCAACAAAAGTGCTTTTATGTTTCAGTGAACAGGATTTTGTGTTGAGCAGGTTTATGTGGG

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199470 True 1569 lncRNA 0.43 1 6787404 6788972

Neighbor

gene id symbol gene type direction distance location
AMCG00001516 NA coding upstream 384 6779662 ~ 6787020 (+)
AMCG00001519 actc1a,act2,zgc:86709,LOC105024319,LOC100534413 coding upstream 10718 6772496 ~ 6776686 (+)
AMCG00001518 NA coding upstream 16504 6753731 ~ 6770900 (+)
AMCG00001517 abcb10 coding upstream 34511 6743705 ~ 6752893 (+)
AMCG00001515 LOC107580738 coding upstream 45464 6736097 ~ 6741940 (+)
AMCG00001522 NA coding downstream 72219 6861191 ~ 6863384 (+)
AMCG00001528 NA coding downstream 82792 6871764 ~ 6874095 (+)
AMCG00001529 LOC107717858 coding downstream 148375 6937347 ~ 6943146 (+)
AMCG00001531 ppm1g,LOC107660231 coding downstream 211469 7000441 ~ 7010715 (+)
AMCG00001532 NA coding downstream 222933 7011905 ~ 7015337 (+)
G158364 NA non-coding upstream 277774 6509294 ~ 6509630 (+)
G158342 NA non-coding upstream 365169 6422000 ~ 6422235 (+)
G158337 NA non-coding upstream 376847 6409021 ~ 6410557 (+)
G158332 NA non-coding upstream 389216 6396920 ~ 6398188 (+)
G158230 NA non-coding upstream 895158 5892046 ~ 5892246 (+)
G158539 NA non-coding downstream 239215 7028187 ~ 7036066 (+)
G158548 NA non-coding downstream 266876 7055848 ~ 7056061 (+)
G158555 NA non-coding downstream 369278 7158250 ~ 7160609 (+)
G158571 NA non-coding downstream 380561 7169533 ~ 7169767 (+)
G158580 NA non-coding downstream 523172 7312144 ~ 7313758 (+)
AMCG00001509 sf3b5 other upstream 391444 6394103 ~ 6395960 (+)
AMCG00001493 NA other upstream 886406 5889836 ~ 5900998 (+)
AMCG00001489 NA other upstream 915974 5869975 ~ 5871430 (+)
AMCG00001486 NA other upstream 1154055 5593680 ~ 5633349 (+)
AMCG00001480 NA other upstream 1404340 5366005 ~ 5383064 (+)
G158478 NA other downstream 85796 6874768 ~ 6876578 (+)
G158537 NA other downstream 234416 7023388 ~ 7028141 (+)
AMCG00001550 NA other downstream 882342 7671314 ~ 7679783 (+)
G158672 NA other downstream 947543 7736515 ~ 7737890 (+)
G158676 NA other downstream 957709 7746681 ~ 7746980 (+)

Expression


Co-expression Network