G158555


Basic Information

Item Value
gene id G158555
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7158250 ~ 7160609 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU199625
AATGTTGATATTCTTCTGGACTGCAACTAAATAAAACACCGGAGTGAGTATAGAAAATCTGAAATACGAAACTGAAGGGAGGTTTAAATGAGACAAAAACGGAGCAGTGGAGGTCAGTGGAAAGCGTTTCACTCCAAGGTGTAACGAGATGGATTTAAAGGAGAAAAAGCTCCATCAGAAatccaaacacacaaaaaaaacaagaataaacaaTTGAATTCAAGGTCTGTGCGGTCTGTTCCATGAATCTACTTCTGGAACTGTAGGACAATGATTTTCTACCTCAAGGCAAGCCATTACTTATTGAATTGACTTCCTGAGCTCCTCTTTAAAGGTACGATTAGTTTAACTGCTAACAATTCATGGAGCATATTTTGAGCAGTCAAGGCATTGCAGTGAACTCTTGGgttttgggtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgcgtgcatgcatgtatgtatgtcatGCATCCATATGTATGTAGCTTGGCATACGACTGGGACAAATGTGGAAGGGCAGTGCCCATCCCCTGTCCGTCCTGCAACAATTCCAGGAGTGTAAAAGGCTTTCGATGGCAAGCTTCTGAAGACCTCAGCTTTTCAAGTTTGTAGCAAGTgccaaaaggaaaacaataaataaataaataacttaaaatactGGATCATCTGCCATCCGTTCAGATCAGTGGTCTGATTCTGACCCTCTCTCTGTTCCTTTTCATTAAAACTGACAATGCCTTCTGACAAAAAATgtaggaggaaaaaaacaactttcaacCCGTGTTTTTAGAGACAGcagacagcaaaaaaaaaaaaacagacatgcagCTCAGAGTACAAGGGATTGCCGGAATAAACTACAGTTCAAACCCCCTCAGAAGGCTATTACAATAACGTTAGCATGTTCTCCAATTTTTGCTTTCCATCCGACAGAAGCTCAAACTGATATACTTTATAcatactgaaatgtaaaaatcagtGCATTTATACATGTTCTTCACAGCCCCACTGAATATTTCAAAGGGGCTCCTAATTATATAAAGAAGAGGAAataaatccatttttttttttttttttttaggaattaAATGACAgaagcaattaatttaaaacacacccTTCCAAGGTCATAAATgcagaacaacaaaataattctaaaaaatatatataaaaagaaaattaaattagaaagaaaaaaaatcatgcatTTTCCATAGCTGTAATATTTACTTTTCCCACAGACTGAACCGAGAGTCtcagcgcagtctgtaaagtatttgatcaattacagtgtacagtaacagcaattcacattttaaatatacagtttggACTTCATGCAATGACAGATTCCATTTTCAAAAAGATCTCATTAGTCACTAGAGAAATCTACACAGCGTACTCATGATGATTGTAGTTTGTCTAGGGATGTGTTTACTAACTGTGGAACTACCCGTTTGtaaagaaaagggggaaaaaaaacgaGAATTGACAAATTATCTAAAACCCTCTCAGTTCAATTGAAAAAGGATCCTGTACATTGCATGAAAGTGTCTTTTCGTCTTTCATCAGTCAGGTTTCCTATCACACGTGAAAAATGTACAAGAAGAGCTGCAGTTGTAgttcaagaacaaaaaaatcttcCTTCTGGGGCTTGAATCGAAAAACACAGTAGAATTCACTTACtcatgttaaaatacagtagtgcaatatgtatatgcatctatacacatacatacatatatatgtttgtgtgtgtatatgcatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatacacagagaaggttgtctgagtgtgtgtttgtgtttatatacacacacacaaatatatattaatctcaGGAGATCAATGTTAATCTGAAATTGAATGACAATGTAAAAACTAcattaatgaatgaaaaacaagttttgtttatttctaagAAAAATCTAAGCTTTCCCTGCAACTCAaagggaataaataataaaaattattaaataataaaaaataaaaatcagcagTTTTATTTGCTA

Function

GO: NA

KEGG:

id description
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU199625 True 2054 lncRNA 0.35 2 7158250 7160609

Neighbor

gene id symbol gene type direction distance location
AMCG00001542 adss,LOC107666526,LOC107375820,LOC107733748 coding upstream 25235 7112652 ~ 7133015 (+)
AMCG00001541 NA coding upstream 137432 7016929 ~ 7020818 (+)
AMCG00001532 NA coding upstream 142913 7011905 ~ 7015337 (+)
AMCG00001531 ppm1g,LOC107660231 coding upstream 147535 7000441 ~ 7010715 (+)
AMCG00001529 LOC107717858 coding upstream 215104 6937347 ~ 6943146 (+)
AMCG00001536 NA coding downstream 109809 7270418 ~ 7296604 (+)
AMCG00001535 akt3,LOC107747540,LOC105912451,LOC107666430,LOC107698756 coding downstream 139581 7300190 ~ 7305321 (+)
AMCG00001539 NA coding downstream 231464 7392073 ~ 7410053 (+)
AMCG00001540 NA coding downstream 261201 7421810 ~ 7452801 (+)
AMCG00001548 NA coding downstream 370337 7530946 ~ 7549993 (+)
G158548 NA non-coding upstream 102189 7055848 ~ 7056061 (+)
G158539 NA non-coding upstream 122184 7028187 ~ 7036066 (+)
G158435 NA non-coding upstream 369278 6787404 ~ 6788972 (+)
G158364 NA non-coding upstream 648620 6509294 ~ 6509630 (+)
G158342 NA non-coding upstream 736015 6422000 ~ 6422235 (+)
G158571 NA non-coding downstream 8924 7169533 ~ 7169767 (+)
G158580 NA non-coding downstream 151535 7312144 ~ 7313758 (+)
G158621 NA non-coding downstream 414305 7574914 ~ 7575132 (+)
G158631 NA non-coding downstream 500975 7661584 ~ 7664572 (+)
G158667 NA non-coding downstream 566941 7727550 ~ 7728815 (+)
G158537 NA other upstream 130109 7023388 ~ 7028141 (+)
G158478 NA other upstream 281672 6874768 ~ 6876578 (+)
AMCG00001509 sf3b5 other upstream 762290 6394103 ~ 6395960 (+)
AMCG00001493 NA other upstream 1257252 5889836 ~ 5900998 (+)
AMCG00001489 NA other upstream 1286820 5869975 ~ 5871430 (+)
AMCG00001550 NA other downstream 510705 7671314 ~ 7679783 (+)
G158672 NA other downstream 575906 7736515 ~ 7737890 (+)
G158676 NA other downstream 586072 7746681 ~ 7746980 (+)
G158725 kat14,LOC106584902 other downstream 772547 7933156 ~ 7933555 (+)
G158836 NA other downstream 998537 8159146 ~ 8161815 (+)

Expression


Co-expression Network