G158580


Basic Information

Item Value
gene id G158580
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7312144 ~ 7313758 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU199652
AGTAAAGTTTGGGTTTCTAAGGTACTGCTAGTGATGCCACAAGGTGTTTCTGTTAATgcatccatgtatttatttatttttacagaatttGGCTactttaaaatgactgaaaataatTCTGCTTGGCTGAATTACTTGAAATTACTTCACTGTAACACACTACCCCTCCATGAAAGAAAATTATGCATTCTTACAAATACCAGTTGGCCCCGACTGATAGGATTGGAAACACGTGAACTGAATGTGAATGGCATTTGTTCACCCTTTCCTTGCCTTTGAAGGTTGAGGTAGATTGGTATTGGGTGAGACTAGTGATATTAAACCATCTGTGGGCAATCAAGAcatatgtgtgtgaatgtatatatactcacactttttaattaatcataaagCTATATACTTAGAAATGGATTCAAGCATATAGCTGAGCTTTCATCCCTTTTCTTTCATTGCTCTTCATGCTTTAAGGACAATGTTAAAGCCCTGGATGAAAAGTATGTAAAATTACCTTGAAAGCACACATGAACACCAACCACAGGTTGTTCACAGAGACCAGtgaaaagtttatatatatagtctatataaTACACTTATTTTCTGTAGTTTGTGCCAGGCCCTTGTACAGTGGCTTCCCTGCACTGAGGTGCGAGTTTCCAGTTGCGCTGCTGAGAGTCTCATCTTGGACCAGATATTAAACCTGTGTTTCCAGGTGAACGGGGTGGAAGGTCTTGAGGAAGCGTATTCCTCAATGGAGTGAGTTGCATTGCAAACGCACACCTCTAATCTCACAAGAGATATCCGCAATCTGCGTGAGTGGATATGTATAGATAGACATATTTACCTGGGAAACCCAACTTTACTTTGAGAGTggcctacaaaaaaaaaaaaaaaacattccttttCCTCTGAGCTTCATCCTGGCGTGCGGTCGGCCTGTCGCCCCCAGAGACGGGCTGACAAAACTGGCCATACCAttagagggggaggggaggcaggGAGGTGCCATGCACTTTTCATAACTTGGCCAAGTGACAATGTGGGGTTTTTCCTTACTAACTGCAGggtctatatataatatatattttacacctCAACGTACACACTTTGCTGCTACTGTTTGTACTGTCTACAACAGATTTTCTTGTTATCTTGCTCCTGGTAGTGTATTATGAACGAGCATGAattgtaaagtatttatttaaagaaaagaagaaaaaaaagacagatctttaaaagacaaaaaaatttaaaaaaaaacttgtaattAATTTTACGTCCATGTAGCTTTAGAGTTTGTGACATTTCTTGACCTTGCTAGCTCTGTCATTAGATCCATGTTAAGATCTAGTCATGTGGTTAAGGATTTTAAGCAGAAGGgactaaaaaatgaaaaaaacttgTATTACTGTcagtcatatttaaaaaaaaaaaaaaaaaaaaaatactgtttatttccTTGAGTATAGGACCCACAAGGATGTGAAAATAATCTGCAAGAAACTGTTTTTTGTACACTGTACATCCTTAGTATTTTTACACGTAAATGTATATGATAGGGATGcacattattttccttcttaCAGACTGCTTAAATAAAGCACTATGTCAATCTGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199652 True 1615 lncRNA 0.37 1 7312144 7313758

Neighbor

gene id symbol gene type direction distance location
AMCG00001535 akt3,LOC107747540,LOC105912451,LOC107666430,LOC107698756 coding upstream 6823 7300190 ~ 7305321 (+)
AMCG00001536 NA coding upstream 15540 7270418 ~ 7296604 (+)
AMCG00001542 adss,LOC107666526,LOC107375820,LOC107733748 coding upstream 179129 7112652 ~ 7133015 (+)
AMCG00001541 NA coding upstream 291326 7016929 ~ 7020818 (+)
AMCG00001532 NA coding upstream 296807 7011905 ~ 7015337 (+)
AMCG00001539 NA coding downstream 78315 7392073 ~ 7410053 (+)
AMCG00001540 NA coding downstream 108052 7421810 ~ 7452801 (+)
AMCG00001548 NA coding downstream 217188 7530946 ~ 7549993 (+)
AMCG00001559 LOC105902337 coding downstream 372626 7686384 ~ 7688398 (+)
AMCG00001558 gtpbp2,LOC108263131,LOC107751133,LOC102796526 coding downstream 382530 7696288 ~ 7710825 (+)
G158571 NA non-coding upstream 142377 7169533 ~ 7169767 (+)
G158555 NA non-coding upstream 151535 7158250 ~ 7160609 (+)
G158548 NA non-coding upstream 256083 7055848 ~ 7056061 (+)
G158539 NA non-coding upstream 276078 7028187 ~ 7036066 (+)
G158435 NA non-coding upstream 523172 6787404 ~ 6788972 (+)
G158621 NA non-coding downstream 261156 7574914 ~ 7575132 (+)
G158631 NA non-coding downstream 347826 7661584 ~ 7664572 (+)
G158667 NA non-coding downstream 413792 7727550 ~ 7728815 (+)
G158668 NA non-coding downstream 415795 7729553 ~ 7731701 (+)
G158671 NA non-coding downstream 421518 7735276 ~ 7735610 (+)
G158537 NA other upstream 284003 7023388 ~ 7028141 (+)
G158478 NA other upstream 435566 6874768 ~ 6876578 (+)
AMCG00001509 sf3b5 other upstream 916184 6394103 ~ 6395960 (+)
AMCG00001493 NA other upstream 1411146 5889836 ~ 5900998 (+)
AMCG00001489 NA other upstream 1440714 5869975 ~ 5871430 (+)
AMCG00001550 NA other downstream 357556 7671314 ~ 7679783 (+)
G158672 NA other downstream 422757 7736515 ~ 7737890 (+)
G158676 NA other downstream 432923 7746681 ~ 7746980 (+)
G158725 kat14,LOC106584902 other downstream 619398 7933156 ~ 7933555 (+)
G158836 NA other downstream 845388 8159146 ~ 8161815 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G682460 NA non-coding CI01180000 null 9270567 ~ 9272900 (+)
eurasian perch (Perca fluviatilis) G193201 NA non-coding NC_053130.1 CM020927.1 11763663 ~ 11808556 (-)
striped catfish (Pangasianodon hypophthalmus) G50002 NA non-coding NC_047597.1 CM018543.1 20744419 ~ 20749478 (-)
mexican tetra (Astyanax mexicanus) G43848 NA non-coding NC_035901.1 CM008304.1 19228154 ~ 19229887 (-)