G158729


Basic Information

Item Value
gene id G158729
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7936272 ~ 7936478 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU199857
CTCTCGATCCAGGCTTTGTTTGATGTGCACTCCCGCCACGGTCCCCAGTGTTAGAGCCAGAGAAACGCCAAGTACTACCTTTGAGGTCGTAGACATAGCTACAGAATGACACTTGAAAAAGAACAAGATCTTAAATGCATCTTATCTCACAAAGCTATACCAATGTGTTTATGGTGCAGACCTCACTAGTCAAATCCAGAGCACTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199857 True 207 lncRNA 0.45 1 7936272 7936478

Neighbor

gene id symbol gene type direction distance location
AMCG00001576 NA coding upstream 7385 7923526 ~ 7928887 (+)
AMCG00001577 NA coding upstream 12778 7922768 ~ 7923494 (+)
AMCG00001574 NA coding upstream 18946 7909198 ~ 7917326 (+)
AMCG00001572 smek2,ppp4r3b coding upstream 40300 7882716 ~ 7895972 (+)
AMCG00001573 pnpt1,LOC106607983 coding upstream 54914 7871153 ~ 7881358 (+)
AMCG00001575 snx5,LOC106611592 coding downstream 3656 7940134 ~ 7962377 (+)
AMCG00001567 rrbp1 coding downstream 39609 7976087 ~ 7995881 (+)
AMCG00001568 NA coding downstream 69957 8006435 ~ 8017420 (+)
AMCG00001591 LOC106565008,LOC103477211,LOC107375568,LOC106929419,LOC107676389 coding downstream 117005 8053483 ~ 8094300 (+)
AMCG00001592 LOC105910181 coding downstream 158154 8094632 ~ 8099017 (+)
G158728 NA non-coding upstream 983 7935074 ~ 7935289 (+)
G158727 NA non-coding upstream 1397 7933973 ~ 7934875 (+)
G158726 NA non-coding upstream 2414 7933658 ~ 7933858 (+)
G158713 NA non-coding upstream 34919 7899443 ~ 7901353 (+)
G158677 NA non-coding upstream 183502 7752402 ~ 7752770 (+)
G158771 NA non-coding downstream 61432 7997910 ~ 7999712 (+)
G158788 NA non-coding downstream 98823 8035301 ~ 8038541 (+)
G158823 mrpl14 non-coding downstream 164973 8101451 ~ 8102415 (+)
G158837 NA non-coding downstream 229295 8165773 ~ 8257189 (+)
G158857 NA non-coding downstream 366072 8302550 ~ 8304840 (+)
G158725 kat14,LOC106584902 other upstream 2717 7933156 ~ 7933555 (+)
G158676 NA other upstream 189292 7746681 ~ 7746980 (+)
G158672 NA other upstream 198382 7736515 ~ 7737890 (+)
AMCG00001550 NA other upstream 256489 7671314 ~ 7679783 (+)
G158537 NA other upstream 908131 7023388 ~ 7028141 (+)
G158836 NA other downstream 222668 8159146 ~ 8161815 (+)
G159174 NA other downstream 1976830 9913308 ~ 9914664 (+)
AMCG00001630 NA other downstream 2221256 10157734 ~ 10159826 (+)
AMCG00001643 spred2 other downstream 2718709 10655187 ~ 10677854 (+)
AMCG00001645 NA other downstream 2811011 10747489 ~ 10757858 (+)

Expression


Co-expression Network