G158836


Basic Information

Item Value
gene id G158836
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 8159146 ~ 8161815 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU199983
AGCCTGTCACTGGGGCTGTGTACAATTTACTGTCTGATTTTCCCAAATTAGGAGATTTACATCTGCAGATGGTGTTATACTTCCAGCCTAATCGTATTACACGTTTATTGCTCCAGGTATCCTTGACATgcattgtttgtctgtttatttattaatattcaacAATAAGCCTTAAGATACAAAATGGTGTTGCACCACAAGATGTAGAAGAcatatatatagagaaagatagagaaatataatacatacataattttttaaataattttaaactaatgtaacaaaaaggaaaacatttaaagtatataaaatcaactttaaagttttttttccatatataaaaaaataaaataatacaccaaataatttgattaaacGTATATACAAACACTCCCtcaaacatttactgtaataCCTGAAGTCTGATAACCATGGTGCCTGATAAGATTTAAAAGCAGTTCTCTTTCAGGATGTACTTCAGCAATCAAGTTCAATTGTTTAACAGAGTTACAAACTAACTGCCACACAATATTAGAACCCAAAACTAGTTCCCTGGAAAGGTTTTTATGGGTAAATTGATTTTCGAACCTAAAATATAAGGAAGGATTTCAGTCACTGTAATATGAACAGTTTTTCTTCCCACTCAAAATGGTCCAAAAAAGCCCCCCCACAAGATCTTGATTTGAAAAACCTGCAAAACTCCATACTCTGAATTCAAACTGTGAACGATTTAGCCCCTGTATGTAGATTTTCTTCAGGAATTCAGGCCAAAAAGAGAAACTAAACATGAACAATGCAATGAGGAGGTGAAGACGCGCATGGGAATGAGGCGCAGGGTAaattcaggacagaaaacaagCCCACGTGaagttaataatacaaatgtgtggGTTTCTTTGGTAGTGTTCTCATGAAAGATTCATTAGCACGGTACCTGCTGATGCAAATACATGGAATTATTGTTTTCCTGagccattgtttttattttatcttagttttgtgtattgtattcAAGTATTGATTGCGGTTTGGCACAGGGCTCACGATGGCACTGGATTCTTGGTTCTCACAGCTTTAAACAACTAAACACCTCAGAGCTGACCTAAATACGGCTCGTCAATgagctctgtgtctctgttatGTAGGACAGTTGGATCGGGTGGGGGTTTGTAATGTTATCCAACAACACTGGCGTTGAGGCCACGACGAGCAAACGCCTTTGATCTAGCAACCTGGATTGAGATCGACATTGATTTAACCCCCTCACACCACCTGACTTTAAAATCATACAcatcttacatttaaattgatagCTCTCCTATTGAAGTTGTACTTTCCCAGCAGCAGTACATGTGTCGACCTTTCCACTAACCTACAGTTCAGTTATTTGTCTTGTAAGCAATCCAAAATGTTGGCATGAGAATTGATCTCTTTTGACAGTTAATACTTGCCTCCCTGTACAAAGGAAAGTGGGCAAAATATCTGCCACCATCGTGACCCGTAGTCAGAAGGCACAGGAATATTGACAGGCTGGTAAAAAGAACCGATTAaaaaatgcactgtatataaatatttacacactgCACAAGTCAACACAATGTACACACATTAACAATATCATGTCATGAAAGTTAAACAATGAATGCTTTCAACTCCACACACATAGGTATGTTTATTCTAACTCCAGGGAAACAGCACCTGTAAAACACACTGACAGCAAAGCTAACTGATCCACCTTTTTTGTTCATTCACATGAACAGTAAATGAGTTGACTGGACTACATGCTGTGAAAAATCGCAATAGCTACACAATGTTGTTCATTTGGAGTTCAACTATGGCACTAATAACTTGTTCTcccctgagtgtgtgtgagtgagcgCCAGATTGTGGTCTGGGCCTCACAGCTTGATCCTGGTGAGGCTGGCTCTGAGCTGGGCCTCCAGGGCCATCTGGTCGAAGGAGCGGCTGTGGATCTgctccctcaccctctccctcaTGTGGAAGGAGGCGCGGGCCACCCGGCGGGACTCCTCCACGGCCGCCTCCTTCTCCCGCAGGATCTGCTCGGTCTTCAGGTCCTTCAGGGCGATGCTGGTGTTGAGATGCCTGCGCAGCTGCGCCTCCTCCTCTCGCAGCCTCTCCCACAGCAGCTGGTGgctcctctccttctcctcgtTCTTCTGCCTGGCCAGCGCCGCTCTCTGCTGCACTTGGGCCTCCGCGGCCACAGCGGCCTGCTGGATGCGGTGCTCGGTGACCCGGGCCAAGGCCTCCTTGTGCCTCTGCTGCTCCCTCTCGTTCGCCTCCGCCTGGGCCTTGGCCCTCTGTATCTGCTCCTCCTCCCAGGTTGCCTGCTCCTTCAGCTTCTGGAGGCGGGCTTCAGCCACCTGCTGCTGGTTCCTGCTGGACTTCAGCAGCTTCTGCTCCAGAGCCATCCTCTTGAGCCGCTCCTGTGTCTGGGCGTGGCTCTCCACCTCTTTCTTGAGAAGCAGGTGTTTCAGCCTCTGGTGCTGGTTGTCCAGCTGCACTTTCCTCCGGTCCCTGCTCTGCCTCAGGAGCCGGCTCCGACTGGCACGCCCAATCTTCTGCTGCGCCTCCCTGCTCTGCATCTCCTTCAGGAGCCGCTCCTCCCGCTCCCTCTCCTTCAGCTGCTGCTCTTGGCACCTCTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199983 True 2670 TUCP 0.45 1 8159146 8161815

Neighbor

gene id symbol gene type direction distance location
AMCG00001589 NA coding upstream 4936 8150133 ~ 8154210 (+)
AMCG00001590 tmem63a,LOC108442067,LOC108271057 coding upstream 15264 8124004 ~ 8143882 (+)
AMCG00001592 LOC105910181 coding upstream 60129 8094632 ~ 8099017 (+)
AMCG00001591 LOC106565008,LOC103477211,LOC107375568,LOC106929419,LOC107676389 coding upstream 64846 8053483 ~ 8094300 (+)
AMCG00001568 NA coding upstream 141726 8006435 ~ 8017420 (+)
AMCG00001582 b3galnt2,LOC107730378 coding downstream 47485 8209300 ~ 8215770 (+)
AMCG00001587 arid4b coding downstream 111849 8273664 ~ 8302470 (+)
AMCG00001586 NA coding downstream 144050 8305865 ~ 8309732 (+)
AMCG00001588 tomm20,LOC103383373,LOC100703030,LOC103375291 coding downstream 149712 8311527 ~ 8315352 (+)
AMCG00001585 irf2bp2,LOC104918200 coding downstream 212470 8374285 ~ 8377410 (+)
G158823 mrpl14 non-coding upstream 56731 8101451 ~ 8102415 (+)
G158788 NA non-coding upstream 120605 8035301 ~ 8038541 (+)
G158771 NA non-coding upstream 159434 7997910 ~ 7999712 (+)
G158729 NA non-coding upstream 222668 7936272 ~ 7936478 (+)
G158728 NA non-coding upstream 223857 7935074 ~ 7935289 (+)
G158837 NA non-coding downstream 3958 8165773 ~ 8257189 (+)
G158857 NA non-coding downstream 140735 8302550 ~ 8304840 (+)
G159041 NA non-coding downstream 615122 8776937 ~ 8777745 (+)
G159101 NA non-coding downstream 1048305 9210120 ~ 9214347 (+)
G159142 NA non-coding downstream 1154296 9316111 ~ 9369910 (+)
G158725 kat14,LOC106584902 other upstream 225591 7933156 ~ 7933555 (+)
G158676 NA other upstream 412166 7746681 ~ 7746980 (+)
G158672 NA other upstream 421256 7736515 ~ 7737890 (+)
AMCG00001550 NA other upstream 479363 7671314 ~ 7679783 (+)
G158537 NA other upstream 1131005 7023388 ~ 7028141 (+)
G159174 NA other downstream 1751493 9913308 ~ 9914664 (+)
AMCG00001630 NA other downstream 1995919 10157734 ~ 10159826 (+)
AMCG00001643 spred2 other downstream 2493372 10655187 ~ 10677854 (+)
AMCG00001645 NA other downstream 2585674 10747489 ~ 10757858 (+)
AMCG00001691 NA other downstream 4168164 12329979 ~ 12333700 (+)

Expression


Co-expression Network