G159748


Basic Information

Item Value
gene id G159748
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12513392 ~ 12515078 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU201108
TTGAAAGTTGTCAAGAAACAGTGTATTTATCAATATAATAGCCTGCTAAACACACAAATGCCAACAGCATTTTTATAATAGTGTTTTAATTGACTTTACACTTAACATGACTAAGCAAACTGAAGATTGGTCCAAGTAACAGACTGAACAAAGTAATATGATTCACTAGATCCTTTTTCAGATGCCATGAGTGGTCTCACtgattgtaaacaaacacaattgtaAACAAAGAAAGATATATCTAAAGCAGTTATTCATTTATAGATTTGCTTCATATGGGTATAAAGAAAAGGTCCCTTTACAATTCCACCAGTTCCCACCCCAATAAAAGTAGGGACCATATATGATCTTTTGCAAACAGTGAAGGTTGAacctgagaaaaataaatgtgtaaataaagtaGATTGTCACAGTTTCAGAACAGAATATTGTTTCAGTTATGATCATTTTGGATAAGGAAGAAATTGCCAGAacagaaatgaattaaaaaagctCAAAAAATGCATGGCTAAAGCGCTCCATGGAAGCCAAGTAACGGACATGGATTTAACCAGGACTATTTTGATTAACTGTTTGGCCACTCAAGACTCAAGGTAAGGATCCTATTAATACTTTATCACACAGTAAACCTATTCAATTTCTCTACGCGTCTAGCTTTTAGGAATGGCGATCAGATTCCTCTAACGATATCTCCATTTCCTTGACTGACTTCTTATAAAGTATTTCCCTTCTTTTGTGCCTTATTTGCCGATTATATCTGGAGAGTTTAAGTATGGTGACATTGAAATTGTCACCACGATTAAGATTacacaaaagaaagacagagattacaaaatacaaaaaatataaaccatAGGGCTGTGTTTTAAGGCAATCATAAGTAGAACAATTCTCACtatatcattttgaaaataaccaGAGaatcacaaaaaatgtaattattccctcatttcctctgtgtgttgatatatattacacacacatatacaaacatactaTAAGTTAAAAATAGTGTGAATGTGTcttcaattaatgttttaagaTTGATATAAAAcagttcatatatttttaaaaccctaAGGGAATATTGCTCGTCTAATTTTGGAGAATCATGCAGTCACGTGTGCTTTCTTGACTACAAAACGTGTTTTGTAAAATACCGCAGTGCAACAAACTTACCATTGTTCTACAGAGATTTTTGACTGGCATATTTATACgaggaaattaaactgaattacagTTACATAATTCATAAACATGATAagtaaaagaaatgcaaatggaTTCAACAAAAATAGAACAATCTATTCTTCCAACATTGGCAACTTTTAACCAACTAGGTCTTCATTTCAGTCAGCTATGCCCAATTCTGGGATATATAACACTGACTGAGTAATATTGTTCAAATGGGATTAgatgtacaattaaatattttttgcagcCAGGATTGAGAAAGGCCATATAAGACTGCAAAGCAATTCCCACTGCAGAACAGTCCATCCGGGACACATGATTACAGTACAAGTGCTTCAGTCTGCAGGCTTGGGTGTCAGAGAACTTAGTGTCCATGTGAATGGAGATCTGGAACTGCCCAATCCTGCACTACTCCTTTACCAAAGATTGTAAAAAACACTGCACCAAAAACATTGATGGCAGCAGAAATGTAGAAGACAGTTTGCCACTCTTC

Function

NR:

description
PREDICTED: chromodomain-helicase-DNA-binding protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201108 True 1687 lncRNA 0.34 1 12513392 12515078

Neighbor

gene id symbol gene type direction distance location
AMCG00001685 NA coding downstream 199363 12311180 ~ 12314029 (-)
AMCG00001675 NA coding downstream 379613 11950262 ~ 12133779 (-)
AMCG00001683 papolg coding downstream 970985 11530107 ~ 11542407 (-)
AMCG00001681 rel coding downstream 989506 11509835 ~ 11523886 (-)
AMCG00001680 NA coding downstream 1019506 11488495 ~ 11493886 (-)
AMCG00001694 NA coding upstream 12205 12527283 ~ 12541555 (-)
AMCG00001696 NA coding upstream 28930 12544008 ~ 12576570 (-)
AMCG00001697 NA coding upstream 148479 12663557 ~ 12663916 (-)
AMCG00001701 rims1,LOC102293251 coding upstream 162394 12677472 ~ 12760544 (-)
AMCG00001700 NA coding upstream 310499 12825577 ~ 12832334 (-)
G159747 NA non-coding downstream 488 12512352 ~ 12512904 (-)
G159746 NA non-coding downstream 1113 12511622 ~ 12512279 (-)
G159745 slc17a5 non-coding downstream 3099 12509800 ~ 12510293 (-)
G159744 NA non-coding downstream 3663 12509220 ~ 12509729 (-)
G159743 NA non-coding downstream 4925 12508214 ~ 12508467 (-)
G159818 NA non-coding upstream 272004 12787082 ~ 12793561 (-)
G159904 NA non-coding upstream 1235802 13750880 ~ 13751089 (-)
G159995 NA non-coding upstream 1660663 14175741 ~ 14203768 (-)
G160025 NA non-coding upstream 1752309 14267387 ~ 14267741 (-)
G160040 NA non-coding upstream 1796063 14311141 ~ 14316143 (-)
G159303 NA other downstream 1842151 10670437 ~ 10671241 (-)
AMCG00001628 NA other downstream 2291674 10212874 ~ 10221718 (-)
AMCG00001625 NA other downstream 2547984 9952372 ~ 9965408 (-)
AMCG00001615 NA other downstream 3410358 9074089 ~ 9103034 (-)
G158971 map1lc3c,LOC107701141 other downstream 3973134 8514367 ~ 8540258 (-)
AMCG00001702 NA other upstream 416153 12931231 ~ 12937243 (-)
AMCG00001704 fam135a,LOC107601029,LOC107747270,LOC107665594 other upstream 427283 12942361 ~ 12977026 (-)
AMCG00001710 NA other upstream 480559 12995637 ~ 13105424 (-)
G159976 NA other upstream 1632550 14147628 ~ 14151555 (-)
AMCG00001733 NA other upstream 1948652 14463730 ~ 14473159 (-)

Expression


Co-expression Network