G159775 (LOC102207824,LOC102800191,LOC107693914)


Basic Information

Item Value
gene id G159775
gene name LOC102207824,LOC102800191,LOC107693914
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12676811 ~ 12679489 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU201143
ttttcttccaCACAatctttatttgtaaataataaaaattaattttttatataaaacatacacgaGTCATTTCAGCCACATCTCtaatacaaacaagaaatgcTGCGGTGAATACTTTGAGCTTCCTTTGTTTCAATGGAACAGATACTTGTAAACaatcagcatttttatttttcaataatactGACAAAGTAAACCAATCAGCCTTACTTGACATGAAAAGtaaactttattaaacatgtttacatgACATGAGTTGGAagttcatttaaaagcacagGGGAGTGTTCAGACAACTGCTTTGAATATAAAGAAAGCATCCAATTACCAGGAATTAAGTTTGGCCATTGTtcaactaaaacaataaaatctaaTAGCGCACCAATGCTACAGTTCCTCCTACTCAGCAGGTCCAGCAGTGATAAACCTTGATTGCCCTGTAGAAATATCGGCACATTTGTTCTGGCCTGTTTGTTAATAACAGACAATCACATGGTGCAGGCagtacaattttatatatatatatatatatatatatatatatatatatatatatatatatatatattttgtgtgtgtcagtgtgcgtgtgtgtgtgtgtgtgtgtgtgtatatatatatattatatatagagaaagagagagctatagatatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtaaatatatatatatatatatatacacacacacacatacatacacatatatatgtagatagatgtagagagatagatagaaagatagaatAGATAAATTAAAATCTTGTTTGTACACAGTTTCTACATCTGTTACAGCCCCACAGTAGGAATCTACaccaaaatatttattaagaaGGGGTTTGGTCAGTACTACATCACTTTTCCCatagggtaaaaaaaaaaaaaaaacagatctttCTATAGACATTTAGCACCAGAATGAAGGACACAATCTGGATTGAAGTGTGCAAAATGTCTATAAGTGAAATGAATGGCTTCGGTTTCTTGCTTATCTCTTTATAATAAGTACGAGCAAACTGTACAAGTACATGCAACATACAAGCTGGCCTATGTGGAActaacacacatttatttaaataactttttctcattttgttttacaaaatatgcATGCAGCTTTGAACAGTTCCAGAGTCATGCTGCTCTACttgatcataaaataaaatggcctGTTTAAGGATGAGAAGAAATGGTATCCTTGCACCTGCACAGTCTGCAGTCTTTTTGtcacatttacagaaatgcacaaagggattttatttgattaatttatttttgaaaatcaaggcaaagaggaaatgaaatggactttttttttttcaaaaagttAAACTTTTTGCAGTAAAAAAATCAAGCTTTTGTGCTtgcattaatttcaaaataatgtaaactaaAATCTGATAAAAACACTAACATGTGCAGGGAGTCTCACCGAAACAGTCAGTGAAACCAAACAAATTGTACCATGCTCTAACCAGGGCAAACAGAGGTGTCTAAAGTGACACATATTCGAACAGCCTGGGTACAGCTCAAAGTGTCATATGCTAAACCCCTTTTATTGGTCAACATCCTGGGAagtcaaatatacatttatacacataaGATCAACTTGTTTATGATTCGAGGAAGAAAACTGCATTACAAGTTAACATTTAACTGTAAAAATTAAGACTGAAGCTGCTTTTTTAACAGTCCCCAGAAATGTTTGAAGAGAGATTGCTTTAGAACTTTTTTTCCatgcaaaacaacagaaaacataaaaaccttTATTCATAATGCAAACGTGTGTGCCtgtatacaaaagaaaaaacgacgAAAGGAGCAGCGTGCGATTGCTGCCATAAAAACCGAGATTCAAAGGCTTTCAAGGGATACAAGAACCAGAACTGGGAACCAGGGGTGTCCAGACACTGGGGGGAGGTTTTGCTGACAGACTGAACGTCTGGGAATGTTCCTGTAGACTACGGCCCTTTTGAAGGGCTTCTGTCAGGAGTGTTAAAGAAGTGCAGGATAGGGGAGCGACTGCAGTGAAATAACACTGATTATAGCTTCAGTGGAATcatggaaacatttattttctcttttgatAGGACTCAGAGATGTTCCAGTTTGATATTTTTTAgtattaactgtttttttttttgattgttaCAAATTAAAAGGGACTCACACTGGCCTACTAGCATCTACTTGGTGCTTTGTTCTGCCAATTAAAAGCAgcattgtcattttgttttaattgtgtttttgcaaCAGCCCTCTTTCATAAAAAATTTACTattggcaaaaaacaaacaggagtGATTGTCTGGCTCCAACAAAGCTTTGATCATGTTCGTCTGGTTCTGATTGTTGTCCtggttttttgtttcttttagttgTATGTCGGCTTGAGTCTCCTAAAAGTTCACTAGGATCTGATGCATGGGGGTCCGCTGGAACTTTCGAGAGATGACTGGGAAGCCCGTCGAGTTAGGGGTGCTAATGTTGGATCCACCAATGAAGAGGGTGGAAACAGTTTGTACCAGCCAATCACTGTGATGGAAAGGTCCAGCTCCTCCAATAGAATCTGTGCAACTCCCATGAAACACTTGTGGTCCATACGCCCATAATCTCCCCAAACTATTA

Function

NR:

description
PREDICTED: regulating synaptic membrane exocytosis protein 1-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201143 True 2653 lncRNA 0.35 2 12676811 12679489
Loading

Neighbor

gene id symbol gene type direction distance location
AMCG00001695 NA coding upstream 150416 12521489 ~ 12526395 (+)
AMCG00001689 LOC102208791,LOC101485550,LOC101166076,LOC107375892,LOC105023253,LOC107098978,LOC103476462 coding upstream 156106 12517012 ~ 12520705 (+)
AMCG00001688 NA coding upstream 161306 12508278 ~ 12515505 (+)
AMCG00001687 NA coding upstream 173617 12475188 ~ 12503194 (+)
AMCG00001692 slc24a3,LOC106576975 coding upstream 227627 12425951 ~ 12449184 (+)
AMCG00001698 NA coding downstream 107593 12787082 ~ 12792831 (+)
AMCG00001699 b3gat2 coding downstream 164675 12844164 ~ 12852723 (+)
AMCG00001708 col9a1 coding downstream 305410 12984899 ~ 13011789 (+)
AMCG00001709 lmbrd1 coding downstream 461608 13141097 ~ 13150256 (+)
AMCG00001718 NA coding downstream 912702 13592191 ~ 13602628 (+)
G159594 NA non-coding upstream 1029359 11625671 ~ 11647452 (+)
G159483 NA non-coding upstream 1237199 11436662 ~ 11439612 (+)
G159441 NA non-coding upstream 1454903 11217319 ~ 11221908 (+)
G159378 NA non-coding upstream 1704721 10969401 ~ 10972090 (+)
G159377 NA non-coding upstream 1708410 10967334 ~ 10968401 (+)
G159798 NA non-coding downstream 106306 12785795 ~ 12876686 (+)
G159800 NA non-coding downstream 120020 12799509 ~ 12810735 (+)
G160024 NA non-coding downstream 1587899 14267388 ~ 14267722 (+)
G160036 NA non-coding downstream 1626536 14306025 ~ 14306260 (+)
G160107 NA non-coding downstream 1846248 14525737 ~ 14526508 (+)
AMCG00001691 NA other upstream 343111 12329979 ~ 12333700 (+)
AMCG00001645 NA other upstream 1918953 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 1998957 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 2516985 10157734 ~ 10159826 (+)
G159174 NA other upstream 2762147 9913308 ~ 9914664 (+)
G160026 NA other downstream 1590126 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 2652131 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 2752848 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 3557773 16237262 ~ 16377860 (+)
AMCG00001841 NA other downstream 4500105 17179594 ~ 17182601 (+)

Expression

G159775(LOC102207824,LOC102800191,LOC107693914) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 50.
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G159775(LOC102207824,LOC102800191,LOC107693914) Expression in each Bioproject

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G159775(LOC102207824,LOC102800191,LOC107693914) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
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Co-expression Network