G159800


Basic Information

Item Value
gene id G159800
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12799509 ~ 12810735 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU201187
AGTCAAGACTTAAGAGCGTCCAGTGTGGGGCACAGATAACGAGTGCAAGCACAGCTGGAAATACAGAGCCTCAGAGTTCGTGCTGGTCGGGTTAAGTAGACTTTTATTATATGACCAATATGTGCACACACGTATGGCATGGCAAATCTGCGCAGTGCAACTGGACTGATTTCCAGGGAGAGAAGCAAGACAGAGCCCCCAGCTGTCAGACACGGAACATGGTCAAACAAAGAACatggcgagagagagagagacagtggcCAGCGGTGGAGAGGAAGCTGAAATGAATACCATTGCCTGCATGCAGACTGGATGAGAAGATGTGAAGCCTGATTTTGAGGAGCTTCTCACCAAAGTGTCTCCTGCTCAGAGGGGGTATAGAAGTTGGGGAGGCTCTGGCTGCAGGGGTCACACACTTTACCCTTCACTTGTCTGCACACAGCAGTCCTGCTGCCATGAATCCATGAGACATATGGACCGGAGGACATACCTGGAAGATTTAGAGGATGTACTATAAGGATTGAAAACAGAGCTGAAGGAATCTGGAACCCAGCTGCACGTTTGAAGCATATTCCCTGGAATCGTTCAAGAAAAAGCTGGATAATACCTTCAGAAGTCTCGGACATCTCTGCATATTCTGAGGGATATTGGATTTTACCTACAGGAATGTTTCTTCTCTGCTTTTGCTAGAGCTGGAAAATCCAAGCTGTGAATGTATTCCAGTCATGCTAAAGTATTTGCACTTCAGTGTTGGAAGTGACTTTGATCTTCCTGGAGAATAAAGATGTGCAAACTCGCCTACATTCTGTCTTTTTTATGAGccaaaaaaatgtttagaattATACAAGAACTTACACTTTTTAGATGTAGAATCTGAAGCATCAAAATGCAATATGTTTGTGCTTTTTTGCCACTGGTCCCTTTgtagaaacataaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201187 True 940 lncRNA 0.44 3 12799509 12810735

Neighbor

gene id symbol gene type direction distance location
AMCG00001698 NA coding upstream 6678 12787082 ~ 12792831 (+)
AMCG00001695 NA coding upstream 273114 12521489 ~ 12526395 (+)
AMCG00001689 LOC102208791,LOC101485550,LOC101166076,LOC107375892,LOC105023253,LOC107098978,LOC103476462 coding upstream 278804 12517012 ~ 12520705 (+)
AMCG00001688 NA coding upstream 284004 12508278 ~ 12515505 (+)
AMCG00001687 NA coding upstream 296315 12475188 ~ 12503194 (+)
AMCG00001699 b3gat2 coding downstream 33429 12844164 ~ 12852723 (+)
AMCG00001708 col9a1 coding downstream 174164 12984899 ~ 13011789 (+)
AMCG00001709 lmbrd1 coding downstream 330362 13141097 ~ 13150256 (+)
AMCG00001718 NA coding downstream 781456 13592191 ~ 13602628 (+)
AMCG00001717 NA coding downstream 807559 13618294 ~ 13661682 (+)
G159775 LOC102207824,LOC102800191,LOC107693914 non-coding upstream 120020 12676811 ~ 12679489 (+)
G159594 NA non-coding upstream 1152057 11625671 ~ 11647452 (+)
G159483 NA non-coding upstream 1359897 11436662 ~ 11439612 (+)
G159441 NA non-coding upstream 1577601 11217319 ~ 11221908 (+)
G159378 NA non-coding upstream 1827419 10969401 ~ 10972090 (+)
G160024 NA non-coding downstream 1456653 14267388 ~ 14267722 (+)
G160036 NA non-coding downstream 1495290 14306025 ~ 14306260 (+)
G160107 NA non-coding downstream 1715002 14525737 ~ 14526508 (+)
G160116 NA non-coding downstream 1748031 14558766 ~ 14563369 (+)
G160129 NA non-coding downstream 1818568 14629303 ~ 14632490 (+)
AMCG00001691 NA other upstream 465809 12329979 ~ 12333700 (+)
AMCG00001645 NA other upstream 2041651 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 2121655 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 2639683 10157734 ~ 10159826 (+)
G159174 NA other upstream 2884845 9913308 ~ 9914664 (+)
G160026 NA other downstream 1458880 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 2520885 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 2621602 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 3426527 16237262 ~ 16377860 (+)
AMCG00001841 NA other downstream 4368859 17179594 ~ 17182601 (+)

Expression


Co-expression Network