G159818


Basic Information

Item Value
gene id G159818
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12787082 ~ 12793561 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU201208
CTCACCATAAATGTACAATGGagtcattttactttatttgtactGTAATGGTCTAATGATACATtggtataatttaatttcaccagCACTTCCCTTGCATACGTTTTTATCAATTTGCGCAGTAGCTTTCTTGTTCGACTGAGACAATGCTTCAAATTAGTCCACATTGTCATAGATTTAAGCACATGTTcagcagtgatttattttgatagCCCGTGATTCAAACCAGAGCCGATTCTTATCTTTACTTTGCATTATGAGAGGGCTCAGTGGACATTCTTCACTTATTATGTTGGAACACATTTGGGTTTGTATAAAATTAGATTCTCCTGTAATGGAGAAATTAATCtttgtaataaatgcatttctgtatctgtatctgttgtGTTCTGAATCTCAGCTGATTGTGGCTCTAAGATGAGGTTCTGCGAGATTCACAGGTCAATCGTGCCCCTCAAAAGAAACCATTTTGAATCTGAAGTTAACCAAGTATATTGTATGTTAAATACAACAAAGCTTTGACTTATACTGAGGGACAATTATAGCCATTCTACAATAGATGGATTAGAAAATGctcaaaatgaaagaaaactatGTAGTGTCACCACCTAAAGATAAATATCTCATGGACACATTGACCAAAGATGCATGCAACTGTCTCTGCTCATCAATGAGAACCACTGGACTTCCCAAAGCTGTCAATTCCTCAAGAATATAAATTGTAACAGTCCTCCAGCATgccattaatttaataaataaataagttgctCAGCTCAGATCCCAATTTAACTATGTGTTTGGATTTTAAGGGAGACCGTAAGACAATActcctggaaaataaaatgtacccaGGGCATtactgttttccatttgttttaatactgtagtttttacaattaattttcTGTTGTAGACAATGGGCTTATACCTTCTGTGTGTGATTAGATGAGGTTCCTGCTtgaatcttttattattttttttacagaatttgtAAGGATATTCTTGCATTATCAATCAGGAGAAGTAAACTTAGGGTAGTAAATCTTGTTACTGGtgtttgtactgtatatataaatcattccCATTTTGTAGTGAACTGTAGAACTGTAGTTCTacgtattaatacatttttattgtgtagAAACATATAAACCTGGATAGACGCTCCATGAAGGATGCACTAAGTTTTAGGAATGGGCTCAGTATTGATCTGATCCTTGTAAATGCCATAGTGAAGCTGGTTGTTCTTGGCCGCTGCCCATGACATTTGCCTGCTGTTGAAACGGGCGGACCAGTCACCGGTCTTGTCAACTACCACGACACCTGCAAGACCCTGAACTCTTTCATACATGTATCCCAAAGCAGCATCAGCAGCCTCCTTAGGTGACTTTCCTTGAAACAGGATGAGTCTGCTCAATGTCACCTTCATGATGGCCTCGCCGTGCCCAGTCGGGGATACTGCACCCACCTGGTTATCTGCATAAGCACCACACcCAATACAAGGTGTATCACCAACCCGTCCCACCATCTTATTCAACATTCCTCCAGTAGAAGTAGCGCTGGCTATGTTCCCTTCAGAGTCGATCGCCACAGCACCAACTGTGCCCGTTTTCCCCATCTGAGTTTCCACTGGGTCCAATCCAGACTCCTTGAGCTTTTGCCACCTCATCCGGGAGTACTCTGTTATCAAGGACTCCTCTGGCACTTCAGGGATGCCCATTTCTTTGGCGAACCTAGAAGCACCTTGGTCAGTCAGACATAGATGACTCGTCTTTTCCATAACAAGTCTCGATAGTTTAATCGGGTTTGCAATTCTTCTGATAGCAGACACTGCTCCACTATTCAGAGTTTTTCCATCCATGATGATAGCATCCATTTCAACCTCTCCCAATTCATTCAGGACAGATCCACCCAGACATTACCAGCATTAAACTTTGGGTTATTCTCTAAAAGCACTACGGTCTCTTCCACAGCGTCCAGCGCGGTCCCACCACGTTGAAGGATGCTGTACCCATGAAGAACAGCTTCACGCACTCCAGCGATGGCCGACGCTTCCCTATCTGGGAGAATGTACCCGGCACCACCGTGAGCCACAATAACTGGCAACATGTCTTCAGTTAGCCTGGTAAAAGAATGCAGATTGGAAGATTTGAGTTATAAATACGACGCGTACAGTCCACTAGAGCTTTACACGTCTACGTTACAGCAGGAATAAAAATCTGTTCCTCCCGTCGGTCGGTCTACACTTGGGTGTGTGTTGAAGAGGTTTCAGGAATTCTCAGCAGATGCATgtcaaaagtaaaacatttattaccAGGTTAACCGGGAGCTCTTCTCTCATGTGAAGTGGAGAAAAGAACTAAGGACATGAGTTGGAGAAGACTTTTTGTATCTTTGAAGATTTGCATAAGACTAGATTACACCTTATTATCCAATTGTACCAATAGTTTACcatatgcataataattaacatgccTGAGATTATGTATTACTGTTGTAGTGTGATGTGTTgaagtgaaaattaaatgtggCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201208 True 2533 lncRNA 0.41 6 12787082 12793561

Neighbor

gene id symbol gene type direction distance location
AMCG00001701 rims1,LOC102293251 coding downstream 26538 12677472 ~ 12760544 (-)
AMCG00001697 NA coding downstream 123166 12663557 ~ 12663916 (-)
AMCG00001696 NA coding downstream 210512 12544008 ~ 12576570 (-)
AMCG00001694 NA coding downstream 245527 12527283 ~ 12541555 (-)
AMCG00001685 NA coding downstream 473053 12311180 ~ 12314029 (-)
AMCG00001700 NA coding upstream 32016 12825577 ~ 12832334 (-)
AMCG00001703 NA coding upstream 60538 12854099 ~ 12870761 (-)
AMCG00001705 smap1,LOC108236281,LOC106518784 coding upstream 106924 12900485 ~ 12902023 (-)
AMCG00001707 adgrb3 coding upstream 396564 13190125 ~ 13191677 (-)
AMCG00001706 NA coding upstream 398203 13191764 ~ 13206374 (-)
G159748 NA non-coding downstream 272004 12513392 ~ 12515078 (-)
G159747 NA non-coding downstream 274178 12512352 ~ 12512904 (-)
G159746 NA non-coding downstream 274803 12511622 ~ 12512279 (-)
G159745 slc17a5 non-coding downstream 276789 12509800 ~ 12510293 (-)
G159744 NA non-coding downstream 277353 12509220 ~ 12509729 (-)
G159904 NA non-coding upstream 957319 13750880 ~ 13751089 (-)
G159995 NA non-coding upstream 1382180 14175741 ~ 14203768 (-)
G160025 NA non-coding upstream 1473826 14267387 ~ 14267741 (-)
G160040 NA non-coding upstream 1517580 14311141 ~ 14316143 (-)
G160080 NA non-coding upstream 1627376 14420937 ~ 14517285 (-)
G159303 NA other downstream 2115841 10670437 ~ 10671241 (-)
AMCG00001628 NA other downstream 2565364 10212874 ~ 10221718 (-)
AMCG00001625 NA other downstream 2821674 9952372 ~ 9965408 (-)
AMCG00001615 NA other downstream 3684048 9074089 ~ 9103034 (-)
G158971 map1lc3c,LOC107701141 other downstream 4246824 8514367 ~ 8540258 (-)
AMCG00001702 NA other upstream 137670 12931231 ~ 12937243 (-)
AMCG00001704 fam135a,LOC107601029,LOC107747270,LOC107665594 other upstream 148800 12942361 ~ 12977026 (-)
AMCG00001710 NA other upstream 202076 12995637 ~ 13105424 (-)
G159976 NA other upstream 1354067 14147628 ~ 14151555 (-)
AMCG00001733 NA other upstream 1670169 14463730 ~ 14473159 (-)

Expression


Co-expression Network