G159995



Basic Information


Item Value
gene id G159995
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 14175741 ~ 14203768 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU201434
TTCTCGTCACCTTGTTTATTGCTAAAACGTTCAACAAATTAACATCTCAGAAGAGTTCACTTGACAACCTCACACTTACAATGTGGTGGGAATGTATATCTGAGTATTGATGCAAGACAAATGactagatatatatatataaaaaagtgaatttcaAACCAAAGAATCATTGCAaagaattgattttatttccacTTTAAAAGGCTTCTCATATTTTGGATCTAAGGTACGCCACATTGTAATGaggaaattaatgttatttatttctaaactgTGCACAATTGCAGGCTGTGAGCTATTTGTCAGTGGATGTTGTAGTAGAGAGACGTATTTCCAAAAACCTGCTAATTGGAACAACACTAGGATGGAGTACAATGGTATGTGGTtgtaaaatcacacattttcccACAGTGTTTAGTTATTGGGAGGGAAGGCATTATTTTAAGGCATAAGACAGTGAAGATCTtcaaatttataaataaataaataaatacataaataaataaaaagcatttagGGCCAAAGAGGAATTTTCTGAGGGAAATACAATCTATTAATCtagtttttcttctgctgtaaCTGATGTCTGCTCATGTGCTTTCTGAACTACTTTACAGATATGTACTGCATAGACTCGCAGACTTTAGGAATTGCCTTTCATCACCATCCTTAaaaagtccttttttttttttggatcaCAGTTGGAATGCTGTCTTGAACAAACTGTGAGTAAATCCATCCTTTTCACTGATCGCTTGGAATAAAATGTTCAGCACGGCAAAAAAAGCCTTCCACCCGCCACAAACAAAGACCAGTTTCCATAGCAAAACTAAGGAGGTATCAAAATACACCCTGTGATTTACGAGCAGATGTAGGGACAGGCCTTATACATATCAAAACATTAAGAGGTGTCTTTTACTATTTTAATCTCGAGTAATTCCTCAGTAATTAGCTTGCAAAACTTGGAAAAATATGAAAGCAATATTCAGTTTCTGTTTACAAtggaattaaatgaataaagttAGAACTTTTTCACTATTTCAGCTGAAAGGCCCTGCTAGGAAATATTCTGCCCCCTTGTGGTCCCTTCACTTGATATTGTACAGCAACTGAAATACATCAGTCTTTCAAACATTCAAGGAAAACTTCTCTTTGTGGAACATTTGTGgcatttatttgctttgcagaaaacatgctttcttAACCATTGATTGTTTGATGGAGTATTTGTATACTCATCAACTGTAAGAAAAATGACGAACCATGAGGACAGTGTGACTTGATGTGGTTACACGTGTATAGCACTAAAGTGTGTGGAAGCACAATGTTTATTCCTTATACTTCAGTTTTACCTTCAGGCACCTACCTTAATGTGTCTAGGTTTCCCTGACTAGACTGATTAAAAGAAAAGCCTCCTCAATTTTCTGAACTTTCAACCCCAGCTCTGCTTAAAATTTCTCATGTAGAGTCCTAGATGTTTCCTTATGTTGTATCATATACATCAAATTATTTCTACTCAGAGTTAGAGATAAACACGGGGAATGTTTACAGTACAAACCAGCTGTGGGTGAATAAGGCATGTGTCGTCTTCACAGTAACAAAAGCACACCTCGCTGTCAAAGACAGTCTACCTCCTCCTGACATGCGAATGATTTTGTGGTCATTTTCTTTGCAATACAAAACATTGCTCAGCACAATATTTCAATTCCACCGCCTCACCGTATGCATACCGTATAATGATTAAGAGGCTGTTGGAGTTGTGTATATCATTTTAGCTTTCTGCAAGCAAATTTATTATAAAAGAAGTGATACAGTGCCCCTGTCCACTCAAAATGAGCCATGCATTGGCATGAATGCACTTTATAATAACTAGTTTGTTCAATGGGACCTGAATGGCCTTAGTCACAGGTAAAGAAATGGCACACTGCTGTAACTCAGTCAAGCATAATGGTAATTGCAAACGCTTAAGTTAaataagagttttttttttgttgacagTCATCTGCGGAGCGagtgttttatttcatagttTTCACATTAGGCTGAAGATCTTAGTGTTTAGCATTTTGAGTACTGAATTGTCCTTCTACACAGTTTGGCAGCATTTCATTGCACGTTCAatagatataaatattatttgtttaccaCCAAGGGTCCAGTGACCTGCCGTATCAACATGTCAGTTCCCAGAAAATTACAGTACATTCAACAACTGTTTCAGAGCAATATGTAGTGTCGCGGTTACACGTTAGTGCGTAAAATTGTTAGTTTATCTTGCaatgtagtatttttttgttaaccTCATTAGAgtatggcaaaataaaataataataataataataataataataataataataataataatctgacaTAACATTAttcacatgaaataaaacacaagacaaataCACATAAGGCCATCTGCATTCAAAACTGCCTTGCtcaatattaaacaataatttctacagaatattttacatCTCGCaacctttaaatatttaatgcacaTTGTAGTCGGGTCTCGGGGTCGGGCCACACTCCCAACTATCTCTTGGAAGTCTTGGCCAGTTTGCTAGCAGCAGGGGACCTCCTCTGAGGCGTGGGGATTTTGGAGGGCTTGGCGGAGGAAGCTCTGGGTCCGGTCCGCAGCCCGGGCCTGCTGGGGTCGTGCACTGTCTCTGACGCGTCGGAGCACACGGACTGAATGTCCGAGATGTCGAAGTCGGAGGCGTCGCTTCCTCTCCGGCTGCTGCCTCTGCTACCAGCTTTGCTTCCCGCTCTGCTGCCTGTTAGCAGCTTT

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU201434 True 2803 lncRNA 0.38 2 14175741 14203768

Neighbor


gene id symbol gene type direction distance location
AMCG00001729 NA coding downstream 105866 14060233 ~ 14069875 (-)
AMCG00001726 NA coding downstream 116015 14057676 ~ 14059726 (-)
AMCG00001728 NA coding downstream 134561 14038870 ~ 14041180 (-)
AMCG00001727 prim2,LOC107743543,LOC107725490,LOC107676604,LOC102784181,LOC108443732,LOC108263846 coding downstream 190414 13978613 ~ 13985327 (-)
AMCG00001715 NA coding downstream 266771 13823609 ~ 13908970 (-)
AMCG00001744 NA coding upstream 136990 14340758 ~ 14343171 (-)
AMCG00001743 hcrtr2,LOC107699124,LOC107597943 coding upstream 144325 14348093 ~ 14359579 (-)
AMCG00001731 NA coding upstream 161679 14365447 ~ 14380677 (-)
AMCG00001732 NA coding upstream 194767 14398535 ~ 14421490 (-)
AMCG00001735 NA coding upstream 221507 14425275 ~ 14431342 (-)
G159904 NA non-coding downstream 424652 13750880 ~ 13751089 (-)
G159818 NA non-coding downstream 1382180 12787082 ~ 12793561 (-)
G159748 NA non-coding downstream 1660663 12513392 ~ 12515078 (-)
G159747 NA non-coding downstream 1662837 12512352 ~ 12512904 (-)
G159746 NA non-coding downstream 1663462 12511622 ~ 12512279 (-)
G160025 NA non-coding upstream 63619 14267387 ~ 14267741 (-)
G160040 NA non-coding upstream 107373 14311141 ~ 14316143 (-)
G160080 NA non-coding upstream 217169 14420937 ~ 14517285 (-)
G160085 NA non-coding upstream 270474 14474242 ~ 14480359 (-)
G160094 NA non-coding upstream 288130 14491898 ~ 14493649 (-)
G159976 NA other downstream 24186 14147628 ~ 14151555 (-)
AMCG00001710 NA other downstream 1070317 12995637 ~ 13105424 (-)
AMCG00001704 fam135a,LOC107601029,LOC107747270,LOC107665594 other downstream 1198715 12942361 ~ 12977026 (-)
AMCG00001702 NA other downstream 1238498 12931231 ~ 12937243 (-)
G159303 NA other downstream 3504500 10670437 ~ 10671241 (-)
AMCG00001733 NA other upstream 259962 14463730 ~ 14473159 (-)
AMCG00001756 NA other upstream 346921 14550689 ~ 14570927 (-)
AMCG00001771 banf1,LOC105900308,LOC107086546,LOC106536379,LOC106576720 other upstream 1295785 15499553 ~ 15501793 (-)
G160255 NA other upstream 1300543 15504311 ~ 15520639 (-)
AMCG00001784 NA other upstream 1487801 15691569 ~ 15702500 (-)

Expression



Co-expression Network