G160080


Basic Information

Item Value
gene id G160080
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 14420937 ~ 14517285 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU201527
TTAGTGTGACATTAAcgccttttatttattcaaatacaatgaCATTACAGTTATATAACAGCAGTATTTCCTTCTGTCACAGTACTGTTAGGGTGTTATAAAATCGTGATCGAGCTATGTCATGGGTTTTGTCTTCCTTGGAGAAGAACAATAATTTGTCCACAATTTACTATTCATTATTtggatacattgtttttaagacTATGATAATATGTTGAtccaccacaaaaaaataaaaattacatttatatatatatatatctaacaGTGCTTGTCAAGATTTCAAATCCAGTGCTATGCTGCAAGGGCTGATATGTTACAGTTTGATGCATATGAACATTTTAACGATCTATCAGATATTTGTTGACACTAATCTGTTAATATAATGGCTTTCAAATCTCTACACAGGTTTACAACGTTTCTACTTCGTGTAATGTTGCTCTGGCCTCTGCAGTTCTGTATTAAGGCAAATGTGTACCACAAGCAAACAACATTGTTAAAATGAAGTGTTACAATAGCATGCAGTTTTTGACAACAAATTATtttaccacaaaaaaacaacaaaaaaacatttgggaCAGAAAGAATGAGCACCTACAGTTAATCAGCTATTAAGGCAAGAATCCTTATATAGTCACATAATAAAGGTAAGTGATCAGGTGTTTATATTTCCTTTCTTGGATTTCTTTACTGCAGTGATTCACACCTGTAGATGTCAGCCGTTCTTCTTCCCGTGCAGTGATGTAAATGGGCTAATGAACAGAGTGTGGAAATGGAAGAGGTCCAAATGTTTTAGCTTAGAAAAAAGTCCCCACTCAATTGGATACATCTTcagaaatcataaataacagggTTTACCTCAAAGAGTTTAGAAACTCTTGAAACACTCTTTAGGGTATTTTTATTGATCCCCCTTGACTGTaccccaaaataataataataataataataataataataataataataataataataataata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201527 True 984 lncRNA 0.32 2 14420937 14517285

Neighbor

gene id symbol gene type direction distance location
AMCG00001731 NA coding downstream 40260 14365447 ~ 14380677 (-)
AMCG00001743 hcrtr2,LOC107699124,LOC107597943 coding downstream 61358 14348093 ~ 14359579 (-)
AMCG00001744 NA coding downstream 77766 14340758 ~ 14343171 (-)
AMCG00001729 NA coding downstream 351062 14060233 ~ 14069875 (-)
AMCG00001726 NA coding downstream 361211 14057676 ~ 14059726 (-)
AMCG00001752 fbx9,fbxo9 coding upstream 9224 14526509 ~ 14533785 (-)
AMCG00001754 agpat5,LOC107665182,LOC102777099,LOC107717842 coding upstream 56528 14573813 ~ 14598148 (-)
AMCG00001755 mcph1 coding upstream 106515 14623800 ~ 14637738 (-)
AMCG00001765 NA coding upstream 713087 15230372 ~ 15258616 (-)
AMCG00001763 NA coding upstream 818736 15336021 ~ 15359019 (-)
G160040 NA non-coding downstream 104794 14311141 ~ 14316143 (-)
G160025 NA non-coding downstream 153196 14267387 ~ 14267741 (-)
G159995 NA non-coding downstream 217169 14175741 ~ 14203768 (-)
G159904 NA non-coding downstream 669848 13750880 ~ 13751089 (-)
G159818 NA non-coding downstream 1627376 12787082 ~ 12793561 (-)
G160132 NA non-coding upstream 41867 14559152 ~ 14563505 (-)
G160311 NA non-coding upstream 1077322 15594607 ~ 15595355 (-)
G160319 NA non-coding upstream 1086558 15603843 ~ 15610716 (-)
G160387 fbxo28,LOC106576958 non-coding upstream 1274711 15791996 ~ 15796358 (-)
G160538 NA non-coding upstream 1717130 16234415 ~ 16235803 (-)
G159976 NA other downstream 269382 14147628 ~ 14151555 (-)
AMCG00001710 NA other downstream 1315513 12995637 ~ 13105424 (-)
AMCG00001704 fam135a,LOC107601029,LOC107747270,LOC107665594 other downstream 1443911 12942361 ~ 12977026 (-)
AMCG00001702 NA other downstream 1483694 12931231 ~ 12937243 (-)
G159303 NA other downstream 3749696 10670437 ~ 10671241 (-)
AMCG00001756 NA other upstream 33404 14550689 ~ 14570927 (-)
AMCG00001771 banf1,LOC105900308,LOC107086546,LOC106536379,LOC106576720 other upstream 982268 15499553 ~ 15501793 (-)
G160255 NA other upstream 987026 15504311 ~ 15520639 (-)
AMCG00001784 NA other upstream 1174284 15691569 ~ 15702500 (-)
AMCG00001791 fam98a other upstream 1311473 15828758 ~ 15833806 (-)

Expression


Co-expression Network