G160085


Basic Information

Item Value
gene id G160085
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 14474242 ~ 14480359 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU201534
AGTTGGCAATCTCCCATCTCCAAAGACATGTCCAGAcaaggtttattattttcactatCATTTTTAATGAAGATTCAAAGCTCTGAACAGAACTAAATGGGATGAGATCAATTAGTTCAgtcaattacacacacaatgcagGAACCAACCACCGACACACGCCGTCTCAAAACCAGATGCCTCGGTTCTCAATCACCAGCCACACACCAATAGTATCTGCATCCGTGTCACTTCATTAATCttcaatataataatgttaaataacatGAGCTGCCAGATGAAGTGTGAAGCGTCAGGGCAAGGCGTGGCTCATCCCAGCTGCAGCCCAGGCAGAATACATGTGTttccagtgtttttaaaaaatatattcaaaccaCTCTCAGTTCTTTGCCAGTCCCCATTCAACCTTCACTACTTCAATACGTCTCTTTCTCATACTCGGTCAATAAGTCACGGTGTACTGTATAAGACTTGCAGCAATTTCTTCTGCAACTCTGAGCAGCTAGAACTGAATACCTgtacttgattttattttaaattaacgtacttattattattattttttgtatataatctAACTGCATATTTGACAGTAAACCTACTCCTGGTAGGCTGTGTCCAGTGAACTCCCTTCATTTTTCTAATGCCTTAATACTTTCAGAAACAGTTTCCTTTCTTTGCGTTGTTATAACGGTTGGCATGCTATTAGGatacacatttgtgttttaatttatgtattcttACCGCAATTACCTACTTaagcttgtatttttttaaaggtgtttatgtatttgtttttaattttcataaacttaaattaaacaaaaatatttgaagagCTTTGAATCTGGCCACATAACTTTACTGCAATCTGATCCATTTCATGCATTTTGCAACTTCATTAACAGTTCCTGGTCTGATTCTGGAAATGTATGTGGATCCATTTGCTTCTTTCTATCACCAGCAAAAGATCGTAGTGGCTGTGGCCTTGTGAGGTCATGGGTAGTTTACATACAACAGTGtgatctttttaaaaattatgaCCTTATTGGAATTGGCAGAGCCCATTTTATACCCTTTCTATTTGAAACTCTGTCATGACAAGTGAAAGTAATCGTACCCATGCAGCTGGTAAGAGTTAAACTAGGACTTGAAGCAAAGAGCAGATTAAAATCATGTTATTGGCcccaaagggaaaaaaaaaataccttgcTTCATACATAATTGCATTTTGATGCCGATTCTTAgtaaaaattgctttttttgatcaagtatttttttatcacacacatattttaatcACTACATTAGTTTACAATTACAAAGACTAGGACATACTGTACAAACCTTTCCAGGTGTTTAAATGTTccctttttaatctgttttctaatatttttgtttttgttaaatttttgtttaacattttttcacaGCTTTACAAACACtaaatttatgtatttattttaaaaatatatttttttgtagctTTCACATCTTAAGATAAGAAACTGACTTGATTGATaagacatgttttaaaaaaaaagaaattaacaaaCACAAGGGGCCATAATCTTTCCTCTAAATACTAAATTTTAAGGCACTTTTGTTGTGACAGGAAAAACAGACTGCATGTTTCAAAATCATAGAGAAGTATTTAAAGTGgctaattaatcaatcaattaattaattaatacattggcATTCTGACATTTTTTTGTGATGCCGTTAAACTTTAATGATTGTGTCTTTTATTAGGTAAAAAACGGTAAATGAGATGCAGTGGTAAATGGTTTATGAACAAAGGGCTTATGACCTAtgtgttaaacacattttaaatgattttatttaatggtaTTTCTCAAGTAAAATGGCAtctgaaatacatgtttttatatagGAACAGGAATATAGGAAATGTGATGACaagttaatgtaatattttgaaatgattaataaataaattttgttatacatacaaatgtaatcgTTTTATCTTAAGTCCTATTCCTCTATAGCAGTGGtatcaaactcaattcctggagggccccgtgtatgctgGACCTCGCTC

Function

GO: NA

KEGG:

id description
ko00620 Pyruvate metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU201534 True 2068 lncRNA 0.33 2 14474242 14480359

Neighbor

gene id symbol gene type direction distance location
AMCG00001734 lrrc1 coding downstream 13187 14435306 ~ 14461055 (-)
AMCG00001735 NA coding downstream 42900 14425275 ~ 14431342 (-)
AMCG00001732 NA coding downstream 52752 14398535 ~ 14421490 (-)
AMCG00001731 NA coding downstream 93565 14365447 ~ 14380677 (-)
AMCG00001743 hcrtr2,LOC107699124,LOC107597943 coding downstream 114663 14348093 ~ 14359579 (-)
AMCG00001752 fbx9,fbxo9 coding upstream 46150 14526509 ~ 14533785 (-)
AMCG00001754 agpat5,LOC107665182,LOC102777099,LOC107717842 coding upstream 93454 14573813 ~ 14598148 (-)
AMCG00001755 mcph1 coding upstream 143441 14623800 ~ 14637738 (-)
AMCG00001765 NA coding upstream 750013 15230372 ~ 15258616 (-)
AMCG00001763 NA coding upstream 855662 15336021 ~ 15359019 (-)
G160040 NA non-coding downstream 158099 14311141 ~ 14316143 (-)
G160025 NA non-coding downstream 206501 14267387 ~ 14267741 (-)
G159995 NA non-coding downstream 270474 14175741 ~ 14203768 (-)
G159904 NA non-coding downstream 723153 13750880 ~ 13751089 (-)
G159818 NA non-coding downstream 1680681 12787082 ~ 12793561 (-)
G160094 NA non-coding upstream 11539 14491898 ~ 14493649 (-)
G160132 NA non-coding upstream 78793 14559152 ~ 14563505 (-)
G160311 NA non-coding upstream 1114248 15594607 ~ 15595355 (-)
G160319 NA non-coding upstream 1123484 15603843 ~ 15610716 (-)
G160387 fbxo28,LOC106576958 non-coding upstream 1311637 15791996 ~ 15796358 (-)
AMCG00001733 NA other downstream 1083 14463730 ~ 14473159 (-)
G159976 NA other downstream 322687 14147628 ~ 14151555 (-)
AMCG00001710 NA other downstream 1368818 12995637 ~ 13105424 (-)
AMCG00001704 fam135a,LOC107601029,LOC107747270,LOC107665594 other downstream 1497216 12942361 ~ 12977026 (-)
AMCG00001702 NA other downstream 1536999 12931231 ~ 12937243 (-)
AMCG00001756 NA other upstream 70330 14550689 ~ 14570927 (-)
AMCG00001771 banf1,LOC105900308,LOC107086546,LOC106536379,LOC106576720 other upstream 1019194 15499553 ~ 15501793 (-)
G160255 NA other upstream 1023952 15504311 ~ 15520639 (-)
AMCG00001784 NA other upstream 1211210 15691569 ~ 15702500 (-)
AMCG00001791 fam98a other upstream 1348399 15828758 ~ 15833806 (-)

Expression


Co-expression Network