G160129


Basic Information

Item Value
gene id G160129
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 14629303 ~ 14632490 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU201590
tttttttttttttttatttttcacattttttattaagaccataattatttgaatagtatcatattacttaaaatgtacatgtaaaatatacaattttaaaacaaaatcctattcacattgttttaaaaatgtaatgcatgattaaatcatttcaaggctgggtttcaaataaaacaaaacaaaaaacacccttCATAAAACTATTCAAGTGGCAGGACTGGCATAAAACTGTGCATGTGTACATATACAATACAACTATTAACAAATAAgcattattgtatgtatatcaATAATCTCAAATTATAACTTTTCAGATGTTGTATAATTTGTTCATAGCAGTCCGTTATTATGTTATCTACTTCTCTAAATGATGTGTGCATATGAAAATATCCCCCAAGGTCAGATGTGAGGAAATGGAGCGGGAAGTATTTCGAGGTTGCACAGATTTCAATGCAAACCGCTTCACCACTGGGATTTAGATTTTTGcgcaacacaaacaacattcattttgccggatcaataaaataaagacgCCACGGGGAAACGGACCTGCACTACGGACTGAACTACGCTATGTCCAGATATTTCACACTTCGCTCAACTATGTCACATCCACCCTGGTGGCTCAGTCCCTCATGATCCATCTGAAACTACCTCAATTTCAAGACCTGCATTTCATCTGACATCGCTTCTAAACCTTTCAAGTCATCTTTCAGGTTAAACACACGCCCAGGGTTTAGAGCTCCTCGGCAACAAACGAGGATAAGGCACTGAGACTCGTACGTTTTCTCTGCCGTGAACTGGAGGCCTCTGCTTCGGATCCCGTCTCCTTCCGTGCCTCGGGTTCACAGAAGAGAGGATGTTCAGTGTCTAGGTTGAGATCGTCAGGGGCATTCAAAGGCGTCTGCTGAAcgtctgcatttgttttttgcgTCCTGTTGCGAGAACCCCTTTTCAGTTTGCTGTTGGTTGAGTCGTTGGTTTCTTTGGTggttctctttctcttccctgGTGGCTCCTCCAGAACGAATGTAGGAAAAGAAACGGGCTCGGGGGGCAGGTTTACCAACGAAGTCCGCCGGACATGGCTTCTGCTCTCCCGAATATTACCAGGAGAGAAATAGTCATCAAACAACCTATCATCCTCGGATGGGGTAGAATTTACAGATTTCCTTGGGGATCTCAAAACAGACAGGAGAgagtccttttttcttttacaaggGGTATATGGCAAAGGTTCCTGAAGTGATTTTCCCAACTTGTTACTtactctctcttttttcttgaaaacaaaatcaattgaaCATGACTGTTTTGGATCTGTCTTTGAAATATCTGGGGAAGCAATGCAGTTCACCACAGGAGGCAATTTAGAGACTGTGTCCTTTTCTGaaacactcacaaacacagtTTTGTTCCTTTCTTCAGGTGACTTCTGTTTATTGCTTTCCTCGCATGGCTTCTCTTGGAAAAGACCGTCATTTGATAAAGATGTACTTCTTTTTTTCTCTACTTTAATTTTCACAGATGATCTTTTAGACTTCTTAGTCTCGGATAAACGAGGACGTTCCATACTTTGATTTGTATCACAAGCAGCTGTGGATTTCCTACATGACCTTCCTTTCTCATGTTTTTTCACTGAACCACTAAAAATGTCATCAAAAGAGGAGTTCAAGTCTTCATTTTGCTCTT

Function

NR:

description
PREDICTED: transmembrane protein 204-like

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0009987 cellular process biological_process

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

RNA

RNA id representative length rna type GC content exon number start site end site
TU201590 True 1692 lncRNA 0.39 2 14629303 14632490

Neighbor

gene id symbol gene type direction distance location
AMCG00001753 NA coding upstream 6700 14605507 ~ 14622603 (+)
AMCG00001750 NA coding upstream 60298 14544548 ~ 14569005 (+)
AMCG00001749 ick,LOC106612589,LOC102778244 coding upstream 84856 14533876 ~ 14544447 (+)
AMCG00001747 NA coding upstream 105035 14520040 ~ 14524268 (+)
AMCG00001751 LOC107664697,LOC107712343,LOC107597698 coding upstream 111218 14496967 ~ 14518085 (+)
AMCG00001757 csmd1,LOC107565077,LOC107717843,LOC107564890 coding downstream 89436 14721926 ~ 14797935 (+)
AMCG00001767 csmd1,LOC107565078,LOC107564890 coding downstream 312316 14944806 ~ 14949138 (+)
AMCG00001766 LOC106589815 coding downstream 383742 15016232 ~ 15118185 (+)
AMCG00001758 NA coding downstream 631608 15264098 ~ 15266184 (+)
AMCG00001759 rps6ka2,LOC107750746,LOC107717821,LOC107702677,LOC105021344 coding downstream 653374 15285864 ~ 15325738 (+)
G160116 NA non-coding upstream 65934 14558766 ~ 14563369 (+)
G160107 NA non-coding upstream 102795 14525737 ~ 14526508 (+)
G160036 NA non-coding upstream 323043 14306025 ~ 14306260 (+)
G160024 NA non-coding upstream 361581 14267388 ~ 14267722 (+)
G159798 NA non-coding upstream 1752617 12785795 ~ 12876686 (+)
G160144 NA non-coding downstream 68644 14701134 ~ 14701456 (+)
G160200 NA non-coding downstream 769795 15402285 ~ 15417554 (+)
G160375 NA non-coding downstream 1196286 15828776 ~ 15829766 (+)
G160463 NA non-coding downstream 1481854 16114344 ~ 16114699 (+)
G160464 NA non-coding downstream 1484715 16117205 ~ 16119266 (+)
G160026 NA other upstream 359113 14269615 ~ 14270190 (+)
AMCG00001691 NA other upstream 2295603 12329979 ~ 12333700 (+)
AMCG00001645 NA other upstream 3871445 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 3951449 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 4469477 10157734 ~ 10159826 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 699130 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 799847 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 1604772 16237262 ~ 16377860 (+)
AMCG00001841 NA other downstream 2547104 17179594 ~ 17182601 (+)
AMCG00001846 NA other downstream 2784861 17417351 ~ 17462934 (+)

Expression


Co-expression Network