G160200


Basic Information

Item Value
gene id G160200
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 15402285 ~ 15417554 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU201689
aaaacgcatttcaaaaaagttaatgttaatgagggaaataagtatttgaccccttcgacttagtacttggtggcaaaacccttgttggcaatcacagaggtcagacatttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcgaggctgacgtttttCCCCAGATTTTCTATGgaattaaggtctggagactggctaggccactccaggaccttaatgtgcttcttcttgagccactcctttgttgccttggctgtgtgttttgggtcattgtcatgctggaatacccatccacgacccattttcaatgccctggctgagggaaggaggttctcaccctagatttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201689 True 403 lncRNA 0.46 2 15402285 15417554

Neighbor

gene id symbol gene type direction distance location
AMCG00001761 NA coding upstream 9609 15388046 ~ 15392676 (+)
AMCG00001759 rps6ka2,LOC107750746,LOC107717821,LOC107702677,LOC105021344 coding upstream 76547 15285864 ~ 15325738 (+)
AMCG00001758 NA coding upstream 136101 15264098 ~ 15266184 (+)
AMCG00001766 LOC106589815 coding upstream 284100 15016232 ~ 15118185 (+)
AMCG00001767 csmd1,LOC107565078,LOC107564890 coding upstream 453147 14944806 ~ 14949138 (+)
AMCG00001770 NA coding downstream 75693 15493247 ~ 15501705 (+)
AMCG00001769 NA coding downstream 84516 15502070 ~ 15525306 (+)
AMCG00001768 gins1 coding downstream 132037 15549591 ~ 15552415 (+)
AMCG00001776 NA coding downstream 160621 15578175 ~ 15610687 (+)
AMCG00001775 NA coding downstream 195458 15613012 ~ 15619118 (+)
G160144 NA non-coding upstream 700829 14701134 ~ 14701456 (+)
G160129 NA non-coding upstream 769795 14629303 ~ 14632490 (+)
G160116 NA non-coding upstream 838916 14558766 ~ 14563369 (+)
G160107 NA non-coding upstream 875777 14525737 ~ 14526508 (+)
G160036 NA non-coding upstream 1096025 14306025 ~ 14306260 (+)
G160375 NA non-coding downstream 411222 15828776 ~ 15829766 (+)
G160463 NA non-coding downstream 696790 16114344 ~ 16114699 (+)
G160464 NA non-coding downstream 699651 16117205 ~ 16119266 (+)
G160542 tubb4b,LOC106575097,LOC105893757 non-coding downstream 859252 16276806 ~ 16278054 (+)
G160648 NA non-coding downstream 1482341 16899895 ~ 16902440 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other upstream 67705 15331620 ~ 15334580 (+)
G160026 NA other upstream 1132095 14269615 ~ 14270190 (+)
AMCG00001691 NA other upstream 3068585 12329979 ~ 12333700 (+)
AMCG00001645 NA other upstream 4644427 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 4724431 10655187 ~ 10677854 (+)
AMCG00001762 NA other downstream 14783 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 819708 16237262 ~ 16377860 (+)
AMCG00001841 NA other downstream 1762040 17179594 ~ 17182601 (+)
AMCG00001846 NA other downstream 1999797 17417351 ~ 17462934 (+)
AMCG00001881 NA other downstream 2770348 18187902 ~ 18209391 (+)

Expression


Co-expression Network