G160464


Basic Information

Item Value
gene id G160464
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 16117205 ~ 16119266 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU202022
CGAATCAGAAACAGGTGAAACATGTGACATTAATAAACTTCAAGGCTGGTCAAGTCCTGACAATATGGAGCATAATCACACTCGTATTCGTGAGATATGTACAAGCTGAGAGAtcttcatttctttaaaattatttactttttcccTTATTTCCTTCTAAAATCACTGAGTGGCAAAGAAGGGTACTTTGCCTGATGTAGACAAAGTTTGTattatatgaaaagaaaaataggaaGTTTTCAAAGTTCTTGATTcattaaaattgaatatttttatgtttaaaggcATTTAAAAGTGTGGTTACCTTTATCAATGTAGAAACAATTTCAAATCCTCCAACTACCAAAAGCAATGGTGCTATGACAATAAGTGGAAGCAAAGAATACCCAATGACTCCGAGGACTTGGCCGTAAGACACCTGTCAATCAAGAGAAATAGAGCTACACACGGTCTCTCTCAGTACCTTCCACCTCTGTGTCACTCACCCTGAACTGGCCATACAGTGAGATCATGGAGAAGAGCAGCACCACAGCCAGGGGACCCCAAAAGTCAGGGTTGTCCCTCACCACCTGCCGGTTAAAGCCCAGGGACGGCATGGGCATCAGCACACAGCGGATTTTATAGTAGATGTCCTTCAGGTCGATATCAAGCTCCTCTCTGTTCGGTGAAGCggggggcggggcggggggAAGAGAAGACACCCATATCATCACAAGGACGAGCACAGAGACCCCCAGGACAGAGCCAGGGCACAGAGTTACACACTGTGATAAGAAAGCTGTCGGGGCTGTATTGTTTATCAGACATCATCACATCTCCTCTGATTTTGCAGCAGGAGGTATAATATGGAGAACGAGGCTAGGCCAGATAACCTGAAGTGATGCAGATGTCACACGAgtgcaataaagaaaaacatgtcatATACTTGTGTTTGTCTTGATCTGAGCTACAGTTAATCATGATGAAATGAGGTTTCCACGCGGAGCGAGAAGGTGAGAGAATGAGGTTTTACGCACAGCAGGGGTTTGATATCTTCAGGGTCATCTTCGTCCACCTCCAGCAGCCAGCCGTAGCCTCGCTGCCTCAGGAATGTGGTGGCATAGGCATCTTTGGCAGAGTCACCGCCTAGGTTGAGCTTAACATCTGGGGCTTCAATTGAACCGCTGAgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202022 True 1170 lncRNA 0.45 2 16117205 16119266

Neighbor

gene id symbol gene type direction distance location
AMCG00001797 NA coding upstream 56789 16054523 ~ 16060416 (+)
AMCG00001785 degs1 coding upstream 313524 15798933 ~ 15803681 (+)
AMCG00001786 fbxo28,LOC106606749 coding upstream 320770 15788706 ~ 15796435 (+)
AMCG00001787 rpac1,polr1c,LOC106576959 coding upstream 328767 15784945 ~ 15788438 (+)
AMCG00001782 lrrc73,LOC106605838 coding upstream 341703 15773679 ~ 15775502 (+)
AMCG00001806 LOC107744706,LOC107081139 coding downstream 3774 16123040 ~ 16130281 (+)
AMCG00001805 NA coding downstream 13419 16132685 ~ 16146802 (+)
AMCG00001807 NA coding downstream 41278 16160544 ~ 16167624 (+)
AMCG00001800 LOC105010553 coding downstream 79882 16199148 ~ 16222274 (+)
AMCG00001799 mtr coding downstream 103478 16222744 ~ 16236002 (+)
G160463 NA non-coding upstream 2506 16114344 ~ 16114699 (+)
G160375 NA non-coding upstream 287439 15828776 ~ 15829766 (+)
G160200 NA non-coding upstream 699651 15402285 ~ 15417554 (+)
G160144 NA non-coding upstream 1415749 14701134 ~ 14701456 (+)
G160129 NA non-coding upstream 1484715 14629303 ~ 14632490 (+)
G160542 tubb4b,LOC106575097,LOC105893757 non-coding downstream 157540 16276806 ~ 16278054 (+)
G160648 NA non-coding downstream 780629 16899895 ~ 16902440 (+)
G160649 NA non-coding downstream 785983 16905249 ~ 16910033 (+)
G160782 NA non-coding downstream 1288991 17408257 ~ 17408616 (+)
G160869 NA non-coding downstream 1678933 17798199 ~ 17804178 (+)
AMCG00001762 NA other upstream 678174 15432337 ~ 15439031 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other upstream 782625 15331620 ~ 15334580 (+)
G160026 NA other upstream 1847015 14269615 ~ 14270190 (+)
AMCG00001691 NA other upstream 3783505 12329979 ~ 12333700 (+)
AMCG00001645 NA other upstream 5359347 10747489 ~ 10757858 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 117996 16237262 ~ 16377860 (+)
AMCG00001841 NA other downstream 1060328 17179594 ~ 17182601 (+)
AMCG00001846 NA other downstream 1298085 17417351 ~ 17462934 (+)
AMCG00001881 NA other downstream 2068636 18187902 ~ 18209391 (+)
AMCG00001883 NA other downstream 2090743 18210009 ~ 18217138 (+)

Expression


Co-expression Network