G160542 (tubb4b,LOC106575097,LOC105893757)


Basic Information

Item Value
gene id G160542
gene name tubb4b,LOC106575097,LOC105893757
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 16276806 ~ 16278054 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU202122
TTGATCAAACGGGATTTATTTGCAGGTGCTTTCTGTACACAACGAGTGAAACAGCACGGCAACACAAACAGTCTGCACAGACAACTGCTGCACGCCACTGCACAGCTTGGAACTATTACTATAACACAAACTTTGGAATAAAACTGAACTCAACAAATTGAACACAAGGCGTGGCATGCATTGACCCCGCAGCTCAGGCCAGCTCCTCACCTTCCTCCTCTTCGAACTCGCCCTCCTCCTCGACCGTGGCATCCTGGTACTGCTGGTACTCGGACACCAGGTCGTTCATGTTGCTCTCGGCCTCGGTGAACTCCATCTCGTCCATGCCCTCGCCGGTGTACCAGTGCAGGAAGGCCTTGCGGCGGAACATGGCGGTGAACTGCTCCGAGATGCGCTTGAACAGCTCCTGGATGGCCGTGCTGTTGCCGATGAAGATGGCCGCCACGGTGAGGTAGCGGCCATGCCGCGGGTCGCAGGCCGCCATCATGTTCTTGGCGTCGAACATCTGCTGCGTGAGCTCTGGCACGGTGAGGGCGCGGTACTGCTGGCTGCCCCGGCTGGTGAGCGGTGCGAAGCCCGGCATGAAGAAGTGCAGCCGGGGGAAGGGCACCATGTTGACGGCCAGCTTGCGCAGGTCGGCATTGAGCTGCCCAGGGAAGCGCAGGCAGGTGGTGATGCCGCTCATGGTGGCCGAGACTAGGTGGTTGAGGTCCCCGTAGGTGGGCGTGGTGAGCTTCAGCGTGCGGAAGCAGATGTCGTAGAGCGCCTCATTGTCGATACAGTAGGTGGAGTCGGTGTTCTCCACCAGCTGGTGCACTGACAGCGTGGCGTTGTAGGGCTCCACCACGGTGTCCGACACCTTCGGCGAGGGCACCACGCTGAAGGTGCTCATGATGCGGTCTGGGTACTCCTCCCGGATCTTGCTGATCAGCAGGGTGCCCATGCCCGAGCCCGTGCCACCGCCCAGAGAGTGGGTGAGCTGGAAGCCCTGCAGGCAGTCGCAGTTCTCCGCCTCCTTCCGCACCACGTCCAGCACAGAGTCCACCAGCTCTGCCCCCTCGGTGTAGTGGCCCTTGGCCCAGTTGTTCCCGGCGCCGCT

Function

symbol description
tubb4b Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Acts upstream of or within cilium assembly. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in brain. Human ortholog(s) of this gene implicated in Leber congenital amaurosis with early-onset deafness; hypomyelinating leukodystrophy 6; and torsion dystonia 4. Orthologous to several human genes including TUBB4B (tubulin beta 4B class IVb).

NR:

description
PREDICTED: tubulin beta-4B chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202122 True 1099 lncRNA 0.61 2 16276806 16278054

Neighbor

gene id symbol gene type direction distance location
AMCG00001799 mtr coding upstream 40804 16222744 ~ 16236002 (+)
AMCG00001800 LOC105010553 coding upstream 54532 16199148 ~ 16222274 (+)
AMCG00001807 NA coding upstream 109182 16160544 ~ 16167624 (+)
AMCG00001805 NA coding upstream 130004 16132685 ~ 16146802 (+)
AMCG00001806 LOC107744706,LOC107081139 coding upstream 146525 16123040 ~ 16130281 (+)
AMCG00001813 NA coding downstream 276926 16554980 ~ 16559554 (+)
AMCG00001812 NA coding downstream 290788 16568842 ~ 16587126 (+)
AMCG00001811 fmn2,LOC108413081 coding downstream 327853 16605907 ~ 16635015 (+)
AMCG00001815 LOC106911852 coding downstream 484392 16762446 ~ 16770159 (+)
AMCG00001825 NA coding downstream 538922 16816976 ~ 16821826 (+)
G160464 NA non-coding upstream 157540 16117205 ~ 16119266 (+)
G160463 NA non-coding upstream 162107 16114344 ~ 16114699 (+)
G160375 NA non-coding upstream 447040 15828776 ~ 15829766 (+)
G160200 NA non-coding upstream 859252 15402285 ~ 15417554 (+)
G160144 NA non-coding upstream 1575350 14701134 ~ 14701456 (+)
G160648 NA non-coding downstream 621841 16899895 ~ 16902440 (+)
G160649 NA non-coding downstream 627195 16905249 ~ 16910033 (+)
G160782 NA non-coding downstream 1130203 17408257 ~ 17408616 (+)
G160869 NA non-coding downstream 1520145 17798199 ~ 17804178 (+)
G160895 NA non-coding downstream 1582108 17860162 ~ 17861427 (+)
AMCG00001762 NA other upstream 837775 15432337 ~ 15439031 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other upstream 942226 15331620 ~ 15334580 (+)
G160026 NA other upstream 2006616 14269615 ~ 14270190 (+)
AMCG00001691 NA other upstream 3943106 12329979 ~ 12333700 (+)
AMCG00001645 NA other upstream 5518948 10747489 ~ 10757858 (+)
AMCG00001841 NA other downstream 901540 17179594 ~ 17182601 (+)
AMCG00001846 NA other downstream 1139297 17417351 ~ 17462934 (+)
AMCG00001881 NA other downstream 1909848 18187902 ~ 18209391 (+)
AMCG00001883 NA other downstream 1931955 18210009 ~ 18217138 (+)
AMCG00001880 NA other downstream 2385941 18663995 ~ 18673815 (+)

Expression


Co-expression Network