G160842


Basic Information

Item Value
gene id G160842
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 17602081 ~ 17604562 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU202475
aaattataaatatttaatgttttcattttttaatttttataagtttttgtacaaaaaaacTGTATACAAATCAAGTTTCAAGTGAGACCAATACtatacaaatgaaagaaagaaaagataaaatgcTAGAGCCAAGGTAATCACCGAGCACATGTGAAGCGACGCGTCCGTCTCCCGGGAAGTCAGTCTGGTAAGGCCACACTAATTCAGTTTACAACGAGAAGCAGCAAAACAAttagacagaaataaaatatatctcaGTATGTCTTCCATCTATGTTAAGGCGATGGAGTCTTGCGGAGCACTGGACTGGACAGAGTGCGTCTTTAATAATCATGAATGTGTTAGTTTGTCAGAACGCACTAAACTCTTTCTCTGTTTTGGTTGGACTGAGGAAAGGTATTTGTAGTGTACAGaaacaaaagggaaataaaaacgGGCTTAGAGCTCCTATCATCCTGTTCTACTACTAGTTCATGTCATTTTGAGAGGACAGTATTATTTTCCTGCGCTTCTGTAGTTAAAGACATCTTATCGCACCCAGCATGCCCTGAAGGAGCGTTTAAGCAGCTCCCTATCCCCTGGCAGGAATGCTTTCAGGAATATCCTGCATGTCTGGGTCGAGATTAGCCGTCATCGATAGGAAAAGCCAGTCGCATCCTCCCATTTCATACAGACGCAGAGGTACTCCAGTTAATCTAAAACCTTGTTATTTTGTGTCATTAAAAGTCCCCTTCATTACCCGGCAGGGAAAATGAAGAGGCACTGAACACTGAAAAGCACAAACTCGATATAACTAGTTCTGAAAACTAAATTCATACACAAGTATAAATCCTCCATGTTTCCTCAGGACAGGTGACCTGAGGATTCACATCCCGCCCAGCAGGGAAGTGCAGGACGTTCCCACGACTGCAGCCCTACGATGTGGCAGACAGGAGTTGGAGACAGCATGACACAGTGGCGGTGTGATAAAAATCGGCTTCCACAGCGTGTAAAGAAAACTACGCCATATCCCCCGCCCCGCTGTCTGCATTACAGatctgacaaaagcagcaggggaGCAAATAGACAGAGTTCACCATCATCTGTGGAGCATCTCATTTTGATTCGGTGCGTTTGGAAAGTGTTTCCACATTCCTTGGGACAGATCTGGGGCACAACTGCGGCCAGCTCAGTAAAAAAGTCTAATAAAATTGGCACGTGCGTTCTACAGTAAGGATTAAAAAACTataaatcacataaaataaCCGTTCATTTACATTGACATGATTTTCATTTGAGAAAGAAATGCAGGCCTGGGAACACAGACAGACCAATCAAGCTGAACAGAGTGGAGATCTCTGCCACGAACGTTGAATGATTTCAGTGGGTCGAAGTGCATCACACCTCGCAACGCAACACAACGCAACATTAACTCAACAGAGCCGGACACGGCAGCCTGGGGGGAAGCGATACATCTACGCGCTCTCCGCTGCAGAGGCTGTCAGTTCTGAGCTTTTACATTTGTCTGCGTGTCAGATGTCTTCCAGCAATGGggctaaactaaacaaattgaGAAGAACCTGGAAAGTCTATTGGTCCTCACCAGCACCTAGTGCAGCAGTCAGAAAACCGAACTGGATgagagcagtggttttcacTTTAACAATCTCTAATAAATACAcagttctgtttttgtcttgttttttttaaaccctgaaTGTTGGACACGGACATCCCAACAGGGGAGTCGGTATACCTGCAAAAATGAGTCAGTAAAGCTTCCGAACGACCGTGCCAAATTGATACCACGCTGGGTCAGTCTCGCTACGGTTGAGATGTTCCTCTCAGACGAGGACAGCGATCACAGACACCCGATGGAGATTACAACCGTTTCAATCTCAATTACGACAGAAAGCTCAAATTAAAGGTCTCTTAAATCAAGCTTTGACTTGGACTCAGAGGTCCTCTTCAGTGTACTGGTTTTACTGGTTCAGCCTGTTCAGCTGTAAAAGGTGTTGCTAGCGTTGGCCAGACCTTCAGACCGGGCGATGGGTTAACCCTTTCAGCGTTCCCTGTCCTAATCCACGCCTTTAAAATTCCAGAGTTGTGTAATGAGCGTCTTTAATAGGTCAATCctacacagaaaacaataataggTGAACGACACTCTTTAGGGTGGAGAAAAACTGTATTCTGCACATTTTATACTGAAACCTGAAGAGATTTCACATCACAAATTCATTGGAAGTCACGGGGGAGAAAAATAACAAGACCATATAAAGgtgtagtaaaaaaaaagccttcatTTCCTAGTAACTCATCTCAGGGATCGGGGGAAAGGGTTGTGGGAGCcgaacagaaaaataaagataacaaatctgtaaaaaaaagaaaaaagaacaaacaatgaaaacaaagccGAAGCGAATCAAACTCATAACCGTACATTAAAGTTAATGCCTCATAACATCCACACCTCAATCTGAGGTTAAAAATTTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202475 True 2482 lncRNA 0.43 1 17602081 17604562

Neighbor

gene id symbol gene type direction distance location
AMCG00001857 NA coding downstream 17596 17583457 ~ 17584485 (-)
AMCG00001855 NA coding downstream 21220 17573660 ~ 17580861 (-)
AMCG00001845 LOC107739475,LOC107565601,LOC107728072 coding downstream 368776 17216410 ~ 17233305 (-)
AMCG00001842 LOC106512626 coding downstream 419465 17165832 ~ 17182616 (-)
AMCG00001844 NA coding downstream 447215 17153503 ~ 17154866 (-)
AMCG00001864 kcng3,LOC108273984,LOC107756869,LOC107590001,LOC107758134 coding upstream 268981 17873543 ~ 17879017 (-)
AMCG00001869 NA coding upstream 325556 17930118 ~ 17936656 (-)
AMCG00001867 NA coding upstream 334351 17938913 ~ 17946511 (-)
AMCG00001871 NA coding upstream 524152 18128714 ~ 18130167 (-)
AMCG00001870 NA coding upstream 530535 18135097 ~ 18187983 (-)
G160783 NA non-coding downstream 193464 17408211 ~ 17408617 (-)
G160682 NA non-coding downstream 626202 16975448 ~ 16975879 (-)
G160640 NA non-coding downstream 747124 16854653 ~ 16854957 (-)
G160631 NA non-coding downstream 784886 16816939 ~ 16817195 (-)
G160548 ryr2,LOC107395022,LOC102799451 non-coding downstream 1286518 16315327 ~ 16315563 (-)
G160903 NA non-coding upstream 261454 17866016 ~ 17866221 (-)
G160928 NA non-coding upstream 310856 17915418 ~ 17915691 (-)
G160944 NA non-coding upstream 434142 18038704 ~ 18039374 (-)
G161030 NA non-coding upstream 657682 18262244 ~ 18346022 (-)
G161039 NA non-coding upstream 696522 18301084 ~ 18304098 (-)
G160817 NA other downstream 70091 17530866 ~ 17531990 (-)
AMCG00001843 NA other downstream 509532 17091353 ~ 17092549 (-)
AMCG00001791 fam98a other downstream 1768275 15828758 ~ 15833806 (-)
AMCG00001784 NA other downstream 1899581 15691569 ~ 15702500 (-)
G160255 NA other downstream 2081442 15504311 ~ 15520639 (-)
AMCG00001865 NA other upstream 203456 17808018 ~ 17810097 (-)
AMCG00001863 LOC105006094,LOC104951035,LOC101160874,LOC106578938 other upstream 255577 17860139 ~ 17865379 (-)
G160925 mta3,LOC105904126,LOC106516625,LOC107749351 other upstream 304192 17908754 ~ 17910853 (-)
G161153 NA other upstream 1231220 18835782 ~ 18850884 (-)
AMCG00001945 NA other upstream 2735863 20340425 ~ 20347505 (-)

Expression


Co-expression Network