G160869


Basic Information

Item Value
gene id G160869
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 17798199 ~ 17804178 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU202511
CAGATGGCAGACGAGGGTTTGTTTAAAGAGCAGCTTCATCGGTCCATcagttttgtacttttttcaaATGGTGCAGAAAGCCCGGATCCCGTGAcaattaagactttttttttttttagacataaAATGCAGCCTGTTTTGGGTTTCTCAGCCTTTTTCTTCggaaggcttttattttttggggatGTCCAGTTCATTTGCCTTACCCTTTACCTACAGCgagaagatgatgatgataattgcAGCTCAGATggtccagtgtttttttttgtgttttctttagcaGAAGCTTTTGTAACCAGTATAGGACGGTAATAACACCCTGTGACTCGACAAGATTGTGGAGGAACAACCACGTGAAAGGGCTTCACGGTTGAGAGCATCTTAATCCCAGCGTGCGTAATCAAGCTTAATAAACTGCCAACCAAAATCCACTTTACTTTTATAATCGTGGGGCCAGAAACCTCTCCTCGCTTTAACATAAAGGACAGAGGGACGGACGGATGTAAAGCTGGTCGCGAAACAAATCCTTGAATGAAACTCTGATGCCGTTAGAGGAGTGAAGGTAAACACTGTGTATGCATAGGAAATCGGAGGACTAATACAGcaacaaattaaatttgctGAGCTGACGCTGCCGGCACCAAAAGCACCGGTAATTGGTGGCGCTCCTCTGAGCCAGCGGGGGAGGTGCCCTATAAAGTGCTTTATAGCTCTTGGCTCGAGCAGCCAGTGGCGCAGGGGCCCTCTGCTGGGGGCGGGGTGGCGGCTGGGGCTATTGAGGGACTGAGGAGCTTTGGTTTGGTGTCCCACCTGGTTTGGGGTCAGACAATTCCCCGCACACCCCTCGCCGCCCCCTGGTGGTACACCGGGAAACGATGCCCAGGCAGAGTGTGGATCCGTCACATTCGGCTGCGTTTATTATGCTTGATTAACAGTACAGAGCTGGGCGGCCTTTTCTGTGGTTGTAACTGCATAATTATATGTTCCTGTTATTTGAAACTCAAATGTCACGCGGCATGTTTGTAGGTATTTGAGAATGAAATCCCTAACAAGGAGTTCTGGTTTTGTTCTGATTCGAGGTCTTCTGGAcagagttgtgtgtgttttatcagcTGGGCATCTGTGCGGTTCTCCGATCTCAATGCAGTGATGTCAAACCTGATTTTTATATGATGCTCCAACCAGCAAGTACACATGGAAAATGTGCTTACTCTAATTTTGTACCGAAGATATAAAAAGACTTAACTGACAGAATATCCATTTCCTATGAACTTATTTATACTTCAAGTATCTAGATGTTTTTTGTGGTAATTTGCTGCATTTTGTAGGGTTGATTAGactgttcttgtttgtttttttgttttgtttttttggacaGTTTCTTTTAAAGTCTTAAGTGTGCAGGCCAGAGTTTACGTGATTGCGCCATTCCAAAAAGTGCATCCCAGCTGTCATTCCCTTCTGATGCATCTACTCAGGATCAATAAAGTCAGGTAAATAGCCATCAAGCAAAGAGAGAACTTCTTACTCCCCCAAACAGCTTTGTCTGCTTCTTTTTCTCAAGCCTAAGGTGATCGATACCTGATGTACtgctaaagaaaaacaaaaacgaaaagGTTCATTCATCCCCACCGGTCGGAAGGAGCTGTTCTTACTCGTTGTGTAAAAGTGCACAGCGCCCGTGGTAGGTTCGGCCGGTGAAATCTCTAGGATGTCAAGCAATGAGGTGCCGCGATCCGTACTGCACGCCGATATTGCGTTTCAAGAAAATATGCAGTCACTGGACATCAGCTTATATAGTGACGCCCGAGAAGAGATCCCCGTTCACGTCCCCGACACAGGAAATAAACGGCATAAGAGAAATTGGGCACTAAACCAAGTGCAGGACTCAGGTTAGAGTAGGCTCATTGCATCTGGTTACAGTGTTTTTGATACAATTTTCAAAGAGTTTGTAGTTTTTCTAAAGGGCTGCTTGCACTTGTACACCACTTTACAGCATCGCCAACATGGGTAGATCATGGGTTCACCAATCATgaatacatcatcatcatcattctgAAGGCTGATGTTTTGAGGGATGTTGTAGGTAATGTGTGAGCATTGTTGTCTGTATTGTAAGTGATGTGGTGAAGGTCAGTGGAGCTGTGGAGAGTGGAGATGTCATGTTCATTTGAAGGGCACAAGATGATGCGATTAAGGTGACGCTTCAGTATTAAAGTGAGAGTGGGGTGGGATTAGTGCAGATGTACTTTCAGATGTCAAACTGGAGGCTGTTTGCATTTCCAGCTTGTCTATAAagaaccttttctttttctttttgctcttTGCGTTGATTTTTCAGATTGCTACccaaaaattacttttttactGGGGAAAGGTGTCAGTAGATGTTGCTGTAGTTCTGTGGGTTGATTGACCATAGGAAAGAAGGAACAGACTCCCAGAATGCCTGGCCACCAACACCAACTTCTGGTCTAAATCAGAACATATTGGCAATCAGGTGTCCAACCCCCTGCTCTCATTGTCCCTGGGGTCTTCGGATCAGCTCAGCTCCTGGGCACACGGGCCTTGTCTCCATGCTAGGAAAAGTTatcccactgctgacaccaaCACTATTCACTGAGAAATAGTAGGCACTGAGCTCTAACCATTTGAGCATTGAACAGGTAGACTGATATGTACTGGGAGAGCAAATGGTGATTCTCTCCCAGCATACACACAATACGCACCAATGCTGAAGTGAATAGTGCCTTCATGGAGTAAAAAGATTGTTTactatcttgtttgttttcttctttatcCAGACATGCTCCATTTTTGTATACAGTGGCTTGTGGTAATATTACAGGTTCAGATTTACAATACAGTCACTTCAGCTTTAGGTTTCAAAATCCAGTCCAGACGTATAGTACTTTAAAtgggtataaatatatatttgtatcagtGGTGCCCAGAGCTCTGTGGTGTCCGTGTCTGTATCTTACTGGAACGAATCCAGGTGATGTACAGCAGAAATTCAATTTGTGATACAAGAACGTTACTTAAACAAGTACATAACTTCAACGATATATATTAGTGCATGTACTCGTTCCGTCTgcatcttttacattttctatgtaTACATTCAGGAACGGATACTTTATGTATATAATGGTAAtcctgtgtgtaaatatatgtagGATTATTAAGGGTTTACAAAAAGGTGCTCAAAACTAAAGGAAAAGGCCAAAATGCTGAAAACAGAGCTGCACATTTTGACAGTTTGTGATGGGTCTTTACTGAGACACATATCCAGCTTTATTGAGCGCAAGATCAATAAGCTGTCTGCACTCCCACTGTTGGGAAACGCAGTCCTCCTGTGTGGGATGTTTTGCTGACCTACAGTGTTCAGACACATTCAAACCCTGAAAGCACCACGATCACGTCATGTTCTAGAATGACCAAGACCTTTGTCCCGAGtgccacacacagcactgtgaaacacacagtagAGTAGATGAGTGACACAGGACACACACGCCACAGCGAGATTGTAGCGTTCCGGGTCCGTTCCCAGAGACTGGAGAGTGGGGAGGTCTGGCCCTGAATGCCTGGTGTTTCTGGTAACGTTGTTCTTGTTCTTGGTGTTTATACGGTATATTAAGTGGCCTTTCACTTACCTCCTCAGAAACTGCTGCAGTCGATTACTTGATTGCTTGAATGTCACTGAGACTATTGCGTGGCTTTCTGTCTAAGAGGAAGGGAATGGCGGGGGGCACCACGCTGTGATGGCAGTGTGTTTACCACACCCAATGTTGGCATTGCTCTGCCCATCTGTCTCTGCCCTGCAGTTTCCATCATTACAAAGGCTGAAGGGTTTGTTTGATTGCTGCAGTTTCTGAGTCAGGTGGGCTAATATCCAAAAATCTAAAACCCAATACCCAAAATGATAAGAAATGTCAGCCTTGAATCAATTCTTGTAGAGCTGTGAATGTGGGGTGACTTTCCAGGTGGCGAGATACCAGGGAGGTTTCCTAAAATGTTCATTTCTGCAAATGCCTTGACAGGTTTTGACGCTGGGCATCCTCTGTGTAACTGTGTTACGGGGCAATGAATATGGAAGACCATGATGTTGTTGAGGCTgtagcagaaacaaaaaatgtcaatgaaatataaatgacaaaaaagaaGTGTTTCACGTGAAGATGTTTGAGCCATTCTGTCTCTCATGCATTCCTGTCAAAGGgcagaaaaaaactgaagattaaaaaaaaatgaaataataaaaacaaaaaccgtGAGAGTGAGAATGACATTGTC

Function

GO:

id name namespace
GO:0030031 cell projection assembly biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202511 True 4302 lncRNA 0.44 2 17798199 17804178

Neighbor

gene id symbol gene type direction distance location
AMCG00001861 NA coding upstream 9412 17787746 ~ 17788787 (+)
AMCG00001859 eml4,LOC107698167,LOC107590012,LOC107695036,LOC107739484 coding upstream 11301 17783849 ~ 17786898 (+)
AMCG00001858 NA coding upstream 19500 17773315 ~ 17778699 (+)
AMCG00001862 NA coding upstream 29090 17766661 ~ 17769109 (+)
AMCG00001848 NA coding upstream 103870 17690869 ~ 17694329 (+)
AMCG00001866 LOC107582777,LOC108273982,LOC107698822 coding downstream 81020 17885198 ~ 17931279 (+)
AMCG00001868 NA coding downstream 133566 17937744 ~ 17940790 (+)
AMCG00001882 abcg8 coding downstream 419876 18224054 ~ 18230265 (+)
AMCG00001875 NA coding downstream 483534 18287712 ~ 18294690 (+)
AMCG00001872 LOC108430462,LOC108273990,LOC107582773,LOC107749348,LOC107698817 coding downstream 524313 18328491 ~ 18340877 (+)
G160782 NA non-coding upstream 389583 17408257 ~ 17408616 (+)
G160649 NA non-coding upstream 888166 16905249 ~ 16910033 (+)
G160648 NA non-coding upstream 895759 16899895 ~ 16902440 (+)
G160542 tubb4b,LOC106575097,LOC105893757 non-coding upstream 1520145 16276806 ~ 16278054 (+)
G160464 NA non-coding upstream 1678933 16117205 ~ 16119266 (+)
G160895 NA non-coding downstream 55984 17860162 ~ 17861427 (+)
G160910 NA non-coding downstream 112617 17916795 ~ 17917054 (+)
G160939 NA non-coding downstream 220018 18024196 ~ 18029816 (+)
G160943 NA non-coding downstream 234526 18038704 ~ 18039374 (+)
G160985 NA non-coding downstream 414586 18218764 ~ 18219031 (+)
AMCG00001846 NA other upstream 335265 17417351 ~ 17462934 (+)
AMCG00001841 NA other upstream 615598 17179594 ~ 17182601 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other upstream 1420339 16237262 ~ 16377860 (+)
AMCG00001762 NA other upstream 2359168 15432337 ~ 15439031 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other upstream 2463619 15331620 ~ 15334580 (+)
AMCG00001881 NA other downstream 383724 18187902 ~ 18209391 (+)
AMCG00001883 NA other downstream 405831 18210009 ~ 18217138 (+)
AMCG00001880 NA other downstream 859817 18663995 ~ 18673815 (+)
AMCG00001889 cript,LOC107582781,LOC107728714 other downstream 1095159 18899337 ~ 18901718 (+)

Expression


Co-expression Network