G161039


Basic Information

Item Value
gene id G161039
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 18301084 ~ 18304098 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU202718
GTCGGCCAGAGCCCCCGCAAATCCCCGGATGAAGTTTTCTGTGAAATCACCGCCAACCAATCAGCGCACTGCATTACGTCACTGTGAACAGTCCCGTCAATCACAGCCTCCACGTTGAGCTGCTACAATGTCGCAACCGTGGCGTCGCGATTTAATACCGAAACGTCTCCTGCTCTCTATGATCTGAATCCGAGCTGCTATCATCATTTGATCAGTCTACACTTGAGAACACAGAGGACTGTTTTCTTACAGCTGGCTGGGGTATTAGAGATAACGGTGGTTGTGGTTCAACACCAAAACAAAGGGTCTAGAATGTCACACATTTTGATAGGCCGATCTGCTGTGTTTGTTCTGCTGCGTAATGGATCTCGGCGCTCTGGACAGGAAATGACTTCATCGCCGAAGAGTGAAGCGGCTGTTCCTCTTCGCCGTGTCCCACCTTGTGGTTTGTGGATCCCGCAGTCCTCTTTGCTCTGAGCTGACGagaacagattttaatttattattttaatgtctatCTCATGTGTTTGGAATTTATCGCAGAAAAACAGACTGCAGACTCTATCTAATTTGGCGAAATCCACAGAGAGGTGCTTAGGAACATGTGACTGCTTTAATTAGTATGTAGATCATATGAATGCGCTTGGAGATCTTGTCTTTTCCACATAGCGTCCATGGGGGAACTTGGGAAGGGATTGCGTGACACGTTCGCCCTAAAATCAGACGAAAACCGTTATTTTTTACATACTCTACTCGTCCTGTGGAACTGAAATGCATCGATGCTCGTTTGACTGTCTCTTAAACTTCTTAAACCACTGGTGAGGATTTGGGGAATTAACGTTTTTCAACCAAGAATGTGTTTTGAAGATGTGGCTCCAGTACTTACAGAGGACGCTCTCGTCCTGACTGACGCCCAACGTTGCGATGGGGTGCGAGGCGTGCACCGCCCTACCTCAAAGGCAACCTGGACGGCCTGCCTTGCTGGGTCCCCAGTGGGACACACATCCGGGGACAGAGACAGGCTTTCATGAAATGTCACCACCGCCACAGCCGCACACGGGGAGGCCTGGTGGGAGGGGGGTATGACAGAAATAGCCCCCGTTTGAAGTGGGGATGGAGACTTTAATGCTCAGAAGATGGCCAGGCAGGGTAAGACATCCCCTCCGGGTCCAGATATCACACAATGCCACGGGAGGCCGTCCCCACAACCGCctcactttcttttcttttcctgctATTCAAAGATAATGATAATACGACATATAAAAGAGGAGGATTAGCTTTCGTTCAAAGGGTTCGGGGGGAGATGGCCGGGCTCGTGTGTCAGAACAAAGACACGTTTTATTTGAGTCTCGGAACAAACAATTCAGATAAACAAATCGGAttatttaacatacatatatatgttactgtgtgtgttacTATTATTCCTGCACAATCTGCCACCTCAGGCTGATCTTTCTTATACACTATAggaacacacaaagacacataaaaccatGATTTCAGAACGAGTGGGACCTTTCTTTTAACTGAGTTTAGCTGTACATTTACCTTTAGGGTAATGATTGACACAAGGTCATGGTTCGTTTTAGCGGTAATGACCGAGTATGCGAATTGTGACatgatgaaaatatattatatatttagcctCTGGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202718 True 1659 lncRNA 0.47 3 18301084 18304098

Neighbor

gene id symbol gene type direction distance location
AMCG00001884 NA coding downstream 22192 18232030 ~ 18278892 (-)
AMCG00001885 NA coding downstream 77332 18216946 ~ 18223752 (-)
AMCG00001870 NA coding downstream 113101 18135097 ~ 18187983 (-)
AMCG00001871 NA coding downstream 170917 18128714 ~ 18130167 (-)
AMCG00001867 NA coding downstream 354573 17938913 ~ 17946511 (-)
AMCG00001876 NA coding upstream 53935 18358033 ~ 18363257 (-)
AMCG00001878 six2a,six2,LOC107666385,LOC107602488,LOC107711421,LOC107602487,LOC107585295,LOC107733704 coding upstream 267950 18572048 ~ 18576564 (-)
AMCG00001879 NA coding upstream 356904 18661002 ~ 18663390 (-)
AMCG00001887 NA coding upstream 402025 18706123 ~ 18719975 (-)
AMCG00001893 pigf,LOC107550047,LOC107698824,LOC107749355 coding upstream 584353 18888451 ~ 18898999 (-)
G160944 NA non-coding downstream 261710 18038704 ~ 18039374 (-)
G160928 NA non-coding downstream 385393 17915418 ~ 17915691 (-)
G160903 NA non-coding downstream 434863 17866016 ~ 17866221 (-)
G160842 NA non-coding downstream 696522 17602081 ~ 17604562 (-)
G160783 NA non-coding downstream 892467 17408211 ~ 17408617 (-)
G161161 NA non-coding upstream 582196 18886294 ~ 18887568 (-)
G161165 cript,LOC107582781,LOC107728714 non-coding upstream 595049 18899147 ~ 18901718 (-)
G161206 NA non-coding upstream 780014 19084112 ~ 19084976 (-)
G161302 NA non-coding upstream 1151026 19455124 ~ 19457742 (-)
G161346 LOC107739892 non-coding upstream 1788015 20092113 ~ 20093345 (-)
G160925 mta3,LOC105904126,LOC106516625,LOC107749351 other downstream 390231 17908754 ~ 17910853 (-)
AMCG00001863 LOC105006094,LOC104951035,LOC101160874,LOC106578938 other downstream 435705 17860139 ~ 17865379 (-)
AMCG00001865 NA other downstream 490987 17808018 ~ 17810097 (-)
G160817 NA other downstream 769094 17530866 ~ 17531990 (-)
AMCG00001843 NA other downstream 1208535 17091353 ~ 17092549 (-)
G161153 NA other upstream 531684 18835782 ~ 18850884 (-)
AMCG00001945 NA other upstream 2036327 20340425 ~ 20347505 (-)

Expression


Co-expression Network