G161153


Basic Information

Item Value
gene id G161153
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 18835782 ~ 18850884 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU202858
AGAGTCACAGAGCAAAGTAGGATCAGTATGCTTTAATAAGAGATCAGTGcagaaatacaactttttttattGGGTTAAAGTTCCCATACAGtcataataattgtaataatgataattgtcAATATGAATTCAGCAATATAGTCATAAACTGTTAATTTCAGTAGCTAGTGTAACTATAAGGTCTCAGATGTTATCAGAAGCAGAGAATTTGCAAAGACAAAGCCCCCGTAACATGGACTCGAATGCTGATATTGTCTTTAagcttgtaaaaaaacaaacaaaacaaaacacaaattgaaGGATGCACGTCAAagccagtgtttgtgtttactgGACCCCTTCAAGTGCGTCACGATGTCCTACAGCGGACCGGCTGCCTTCGCTCCGCTACGCCCTGTCAACGTGCCTCCGCTCTTCTCACTTACTAGAGCACAGTTCGTCTCGCTCTCAGGGACTCTCTTCCCCCGAGTCTCGTGTTTGGCAGGAGGGTATCCGCCGTGAGAAGTGTGCCGAGGGGTGGTAGGGGCCACACAGGGGCCCGGCCCGTTCTGTCGGCGGTCTTATGTTATGTTGGATGACGCAGGTGTGCCGAACTGTCGCTCACACGGATTCCTGTCTGGAAATTCAAGTGTCTCTGCGTTGTCCCCCCACGTGTGTCTTTTCCCTGCACCCTCAGCTCTCTATTGAAGCTCCCGGCCGTTTCCCTTCACTCTGAGCGCCCAGTGTGTGAATCCCCGCTCAGTCACGGACCACATGGCTGTGAGAAACTCCCCGCCCCGTGGACTGGACTGCGGCACACACGGTAGGGATCAGCCCCTAAATGTCCGCTTACGAATACCCCCCgtttatgaaaacaatattatgtTAATACTTATTTATAGCTGATTTGCCATTCCCAGGCATCAAACACGGTCTCTGCTCCCGTTGCATTAATCGGTAGCGTCTCCGTTCCTCTACGCCTTCCCTGATGTCAATGAAAGGAAGCTGTGATCCGtctctcacagttttcacagaCTGAACGGTTCTCCCTGGTACACTGAAGGACCGTCACCAAGACCAGGTCCCCAATAATCTACCCAAAAAGCAACCAAATGATGTGTGAGcgggaggaaaaaaacaaataagatgaATTCCTTGAAACCTCAACAAATAAGACCTCAATCTTAATTCACAGTTCAGTTTCAGACCTACATCTCTGTGTCTACGCgtcagctgggaccatagtatAGACACAGTCATGacccacataaaataaaataaataaatgagaactTCTCTCCATATGCAATTCATGCCCCAATATACCCAGTCTGTGTGCAATACTGGCTTATCACCACCTCATCTTTTTGTTCTCACAGACATTAATGTAACTCTTATCTCACGGAAATAGAAATGTTATCTttagctgcatttgttttagagGAACCTTTTCAATGGATTTCCAGAATTTAAAGGAtctgaaaagataaataaaaatgaaaagagcAAATCCCGAGATGCGAGGTTCTGCCGGGCGTTGATTATGCGCTGTGATCGGCACTATCTAACAAGTCCTTATTAGTACAAAAGAAATGCTTTACCTGTGAGGAGACGACGCACTTGAAGGGAGCGTTAAAGACAATCTCAGCACGTACAGAATACAGCATGTTAATAAAGCCGGATCCCAGGAATGTTctaaaaaatctttaaaaaataaatgcaagtttGTTATACATCTACGAAGCACCATCACGTTAATATTCTCAAGTGAAGTAGTTCtgtatgtcattttttttatacattaatctGCTACATGTCTAGAGTGGAACACAAAGAGATCAATcctttatttcttctttgtaaAGATTAGTAGTACTGGCCCTGTGACAAGGTTATGCGTTCACATCCTAAAATGCCATGATCACAAACACGGAACAGGAAAAAAGGACGAACAGCACTACCGAGAGTGGAGAGACCCACTTCTcatatattaaaagcaaaaacaagaatCCACTCTGCATCTACTGGGTAGATAATACAAAGTACCAAGGCACGTGAAGACTAAACACTATCATAAAAATCTCTGCCAGCTCgatattctgttttttaaaatcgTATACATAGTTTTATTATATGAAATTGGCCACCATACAAAGACAGTTCAACAAAAGCAACAGCTGTGCCACTTTCTCAGTGTCCACATCGCGGGGCGCCACCTGGTAGTTCAGCGTCAGGTCggggggaagagggagaggatgGGCAGGGGGTTGTGCACAGACTGGACTGTCGCTCTGTCCGTCTCTACAGGCGGCAACATTGTGGCACTGGCCGCCTACGCAGAGGCGTAACTCAACCGAACGGCAGAGCCGGGGACGGGGacaggaggagaggggagagggaggggagacagattgtgtttattatagtttttttagttttttggggggaagggagagagggaggagaaggggaAGAAATAACACCTTCATTACAACAGAGAAAACGTTACAGTAGATCAAGGAAATATAGAAtgtctcatttattttctcctttaaaaaaaacaaccaaaaacaaccGGTACTGGTGGGAGAGATCCCAGAGAAGGCCACtgtttgggggggagggggttgggtCTTGATACGTGGACACACTGGACAAGTAAAatcttttatattaatattagaaaTCATCTAATTGCCCaaaaatagatagatatatatttaaaaaataataataaaataacagaagcTGCTCTTCGGGACAGAGGCTGGCGTCCGCAGAGGGGAGGCCCAGGCCGGACCGGCTCAGGAGGCCTGGTCCAGAGCACGGAGCAGGTCGCTCCCCTGCAGCAGGTTCAGCTGGCCCTGCAGGGGGATGTTGACCTCGCAGTCGTATCTCGTCAGCTCGGGCAGGGAGTACGGCTCGAACGAGGGGCCCAGCAGCCGGCTCACCACGCCTGCGGGGAAACGAGTAAGGAAAACACGAGAGGGAAACTTGTCCTTGTGTCCAGATGACATCATACTGTAATTCCTACAGCAGGATAAGACATAACTGCTGGAGTCTCAGTCCTAAGTGCAATCACAGGACAACGACAGCATCGGATTCCAAGACCCAACACATGGACTCATTTACATACAATGAAACTAAATTACAGGCATACAAAGTTCATTCTGTAAGCAGCGCTGATAAGAGCCACAGAGCCGTCCCCAGTGGTTTACACCAGGGGGGCGTCGCTCTGCAGCCGTGGTTATCAGGAGCTGCAGATAAGCAgattcccacacacacacacacacacacacacacacacacagccagcggGACACGAGTCAGAGATGCGTCTACGAACATCCTCCCCACGGGCACACGTCCCTCGCACACTTTGGGTTCCCAGGGGCCCCCGCTGAGGCGTGCGTACCTGTTTTGAGGCTGAGGTTCTCTCGGATCTCCTCGTGGTCGCAGGGGTGAGTGAAGTCGAAGATGCTGTGTCCGGTCAGCTCCACCTGGGGAAGAGAAAACTGCTTTAACTCCCAACTCTCCGCTGCCGTGCTCACGTGGGGTGAGATTCACCGTCTCCGGTAAAGGGGCTCCCTCTCTTTAAATAAACGTGCGGATAAAAGCACGCCTGCCTGGCCACGGGACACGGGTGACCCGACCGAGGAGCCATCTGTGCGGTGGCAGGATTACTAATGACATCACCACTCAGACGGACTCAAAATCAAATTAGTTTGCTGCCGAATACAGTGTTAAATAATGTCCTGTTCAGTTTGAGTTTTGAGTTGTATTTTTCCcttgaattaataaaaatgcaagaacTGTGAAAGAGCG
>TU202859
AGAGTCACAGAGCAAAGTAGGATCAGTATGCTTTAATAAGAGATCAGTGcagaaatacaactttttttattGGGTTAAAGTTCCCATACAGtcataataattgtaataatgataattgtcAATATGAATTCAGCAATATAGTCATAAACTGTTAATTTCAGTAGCTAGTGTAACTATAAGGTCTCAGATGTTATCAGAAGCAGAGAATTTGCAAAGACAAAGCCCCCGTAACATGGACTCGAATGCTGATATTGTCTTTAagcttgtaaaaaaacaaacaaaacaaaacacaaattgaaGGATGCACGTCAAagccagtgtttgtgtttactgGACCCCTTCAAGTGCGTCACGATGTCCTACAGCGGACCGGCTGCCTTCGCTCCGCTACGCCCTGTCAACGTGCCTCCGCTCTTCTCACTTACTAGAGCACAGTTCGTCTCGCTCTCAGGGACTCTCTTCCCCCGAGTCTCGTGTTTGGCAGGAGGGTATCCGCCGTGAGAAGTGTGCCGAGGGGTGGTAGGGGCCACACAGGGGCCCGGCCCGTTCTGTCGGCGGTCTTATGTTATGTTGGATGACGCAGGTGTGCCGAACTGTCGCTCACACGGATTCCTGTCTGGAAATTCAAGTGTCTCTGCGTTGTCCCCCCACGTGTGTCTTTTCCCTGCACCCTCAGCTCTCTATTGAAGCTCCCGGCCGTTTCCCTTCACTCTGAGCGCCCAGTGTGTGAATCCCCGCTCAGTCACGGACCACATGGCTGTGAGAAACTCCCCGCCCCGTGGACTGGACTGCGGCACACACGGTAGGGATCAGCCCCTAAATGTCCGCTTACGAATACCCCCCgtttatgaaaacaatattatgtTAATACTTATTTATAGCTGATTTGCCATTCCCAGGCATCAAACACGGTCTCTGCTCCCGTTGCATTAATCGGTAGCGTCTCCGTTCCTCTACGCCTTCCCTGATGTCAATGAAAGGAAGCTGTGATCCGtctctcacagttttcacagaCTGAACGGTTCTCCCTGGTACACTGAAGGACCGTCACCAAGACCAGGTCCCCAATAATCTACCCAAAAAGCAACCAAATGATGTGTGAGcgggaggaaaaaaacaaataagatgaATTCCTTGAAACCTCAACAAATAAGACCTCAATCTTAATTCACAGTTCAGTTTCAGACCTACATCTCTGTGTCTACGCgtcagctgggaccatagtatAGACACAGTCATGacccacataaaataaaataaataaatgagaactTCTCTCCATATGCAATTCATGCCCCAATATACCCAGTCTGTGTGCAATACTGGCTTATCACCACCTCATCTTTTTGTTCTCACAGACATTAATGTAACTCTTATCTCACGGAAATAGAAATGTTATCTttagctgcatttgttttagagGAACCTTTTCAATGGATTTCCAGAATTTAAAGGAtctgaaaagataaataaaaatgaaaagagcAAATCCCGAGATGCGAGGTTCTGCCGGGCGTTGATTATGCGCTGTGATCGGCACTATCTAACAAGTCCTTATTAGTACAAAAGAAATGCTTTACCTGTGAGGAGACGACGCACTTGAAGGGAGCGTTAAAGACAATCTCAGCACGTACAGAATACAGCATGTTAATAAAGCCGGATCCCAGGAATGTTctaaaaaatctttaaaaaataaatgcaagtttGTTATACATCTACGAAGCACCATCACGTTAATATTCTCAAGTGAAGTAGTTCtgtatgtcattttttttatacattaatctGCTACATGTCTAGAGTGGAACACAAAGAGATCAATcctttatttcttctttgtaaAGATTAGTAGTACTGGCCCTGTGACAAGGTTATGCGTTCACATCCTAAAATGCCATGATCACAAACACGGAACAGGAAAAAAGGACGAACAGCACTACCGAGAGTGGAGAGACCCACTTCTcatatattaaaagcaaaaacaagaatCCACTCTGCATCTACTGGGTAGATAATACAAAGTACCAAGGCACGTGAAGACTAAACACTATCATAAAAATCTCTGCCAGCTCgatattctgttttttaaaatcgTATACATAGTTTTATTATATGAAATTGGCCACCATACAAAGACAGTTCAACAAAAGCAACAGCTGTGCCACTTTCTCAGTGTCCACATCGCGGGGCGCCACCTGGTAGTTCAGCGTCAGGTCggggggaagagggagaggatgGGCAGGGGGTTGTGCACAGACTGGACTGTCGCTCTGTCCGTCTCTACAGGCGGCAACATTGTGGCACTGGCCGCCTACGCAGAGGCGTAACTCAACCGAACGGCAGAGCCGGGGACGGGGacaggaggagaggggagagggaggggagacagattgtgtttattatagtttttttagttttttggggggaagggagagagggaggagaaggggaAGAAATAACACCTTCATTACAACAGAGAAAACGTTACAGTAGATCAAGGAAATATAGAAtgtctcatttattttctcctttaaaaaaaacaaccaaaaacaaccGGTACTGGTGGGAGAGATCCCAGAGAAGGCCACtgtttgggggggagggggttgggtCTTGATACGTGGACACACTGGACAAGTAAAatcttttatattaatattagaaaTCATCTAATTGCCCaaaaatagatagatatatatttaaaaaataataataaaataacagaagcTGCTCTTCGGGACAGAGGCTGGCGTCCGCAGAGGGGAGGCCCAGGCCGGACCGGCTCAGGAGGCCTGGTCCAGAGCACGGAGCAGGTCGCTCCCCTGCAGCAGGTTCAGCTGGCCCTGCAGGGGGATGTTGACCTCGCAGTCGTATCTCGTCAGCTCGGGCAGGGAGTACGGCTCGAACGAGGGGCCCAGCAGCCGGCTCACCACGCCTGCGGGGAAACGAGTAAGGTGTCATTCAGACGTGGCGCTCTTTGGCACACACGTGCAACACGCGGGGCAGGCCGAGACTCACCTCAGTACGTAGTTGACGCACACGATGCACTGCGGCTGCGAGTTGCGCGTGTTGTAGATGACCGTGCCCTGAGTCTCCACCCAGACGTAGCCTCCGTGCTTCGCCAGCATCCTGTACTGGCCGCTCACCGCCTGGCCCTTGGTGCACACTGGGAAGAGACACGGAGACCACGTGTACAAGACATGCAtgcatcagagagagagagaggtgtgggggctggggggcagCGTGGGAATTGTGTGGGCTAGCTATGGGCAGTGAGCaatgaatgtaataaatagACGCATGCCTTAACGAACTGTACTGCATTGTCCGTGTGGCTTAATTTCG

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU202858 True 3804 TUCP 0.47 3 18835782 18850884
TU202859 False 3348 lncRNA 0.47 3 18842976 18850884

Neighbor

gene id symbol gene type direction distance location
AMCG00001887 NA coding downstream 115807 18706123 ~ 18719975 (-)
AMCG00001879 NA coding downstream 172392 18661002 ~ 18663390 (-)
AMCG00001878 six2a,six2,LOC107666385,LOC107602488,LOC107711421,LOC107602487,LOC107585295,LOC107733704 coding downstream 259218 18572048 ~ 18576564 (-)
AMCG00001876 NA coding downstream 472525 18358033 ~ 18363257 (-)
AMCG00001884 NA coding downstream 556890 18232030 ~ 18278892 (-)
AMCG00001893 pigf,LOC107550047,LOC107698824,LOC107749355 coding upstream 37567 18888451 ~ 18898999 (-)
AMCG00001892 LOC108429343,LOC106589406 coding upstream 54311 18905195 ~ 18910940 (-)
AMCG00001891 mcfd2 coding upstream 124147 18975031 ~ 18979293 (-)
AMCG00001902 NA coding upstream 189569 19040453 ~ 19042847 (-)
AMCG00001903 LOC107670363 coding upstream 199418 19050302 ~ 19052311 (-)
G161030 NA non-coding downstream 489760 18262244 ~ 18346022 (-)
G161039 NA non-coding downstream 531684 18301084 ~ 18304098 (-)
G160944 NA non-coding downstream 796408 18038704 ~ 18039374 (-)
G160928 NA non-coding downstream 920091 17915418 ~ 17915691 (-)
G160903 NA non-coding downstream 969561 17866016 ~ 17866221 (-)
G161161 NA non-coding upstream 35410 18886294 ~ 18887568 (-)
G161165 cript,LOC107582781,LOC107728714 non-coding upstream 48263 18899147 ~ 18901718 (-)
G161206 NA non-coding upstream 233228 19084112 ~ 19084976 (-)
G161302 NA non-coding upstream 604240 19455124 ~ 19457742 (-)
G161346 LOC107739892 non-coding upstream 1241229 20092113 ~ 20093345 (-)
G160925 mta3,LOC105904126,LOC106516625,LOC107749351 other downstream 924929 17908754 ~ 17910853 (-)
AMCG00001863 LOC105006094,LOC104951035,LOC101160874,LOC106578938 other downstream 970403 17860139 ~ 17865379 (-)
AMCG00001865 NA other downstream 1025685 17808018 ~ 17810097 (-)
G160817 NA other downstream 1303792 17530866 ~ 17531990 (-)
AMCG00001843 NA other downstream 1743233 17091353 ~ 17092549 (-)
AMCG00001945 NA other upstream 1489541 20340425 ~ 20347505 (-)

Expression


Co-expression Network