G161165 (cript,LOC107582781,LOC107728714)


Basic Information

Item Value
gene id G161165
gene name cript,LOC107582781,LOC107728714
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 18899147 ~ 18901718 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU202874
tgaatataaaaaccATTTGGGagatttatttaatgatgtatAACTTACATTAAATGGACAAAACAATCTTTCTACATTAACAGTCTCTTAAATTGGCAGCTTCCATGAGCactaataatttcaataaagcACATTTACAATAAGTAAAGACCTCTGTGTACAATCTTGTGGATTGTGTTACAATTTCAACAATGACATTGAACTAAAATACAGACTTGTGGGGGGATTAGAAAGGAAATTGACATtgcattacaattattacacTCAAAGATGTGAAAgtaccccccccacacactgatAGTGCATCATGCCCATGCCTGCATATTAAAGAGCAACTCGACCGCCGGCATCTGTGCACAGCTATTTACAGGAGAGAACGGCACAGAACATAAAGATATTACCGTAGTAAACACGTGGTTTAAAACAGTTCAGGGGAATCACTcttaataaaatagaaaagacTCAAAAGCCGGGTCACTTCAGAGCGGCTGGCAACAGTTTCGGGGGAAATCCTACCATGCAGCGGCCGAACCAAGGCTCTCGGCTTGGCCCGTGATCCGGCAGCTCTACCAATCCCTCATCCGTGCGGGAGCTACACGGACGTCTGCTTGTAGTTTTTGGTTTCCAAGACCTTCTTGCCACACATGGCGCAGATGCCTTTCTTGTACGCGCAGCCCTGGCAGTAGTTGGAGCCAGACTGGTGCACCGAGCTCTTACAAATCCTGCAGATGGCGAATCTCGACTTTCCATAGGGATCAAACCTCGCCTTTTTGGAAGTCAGTGCCTTGTTTTCATTTAGCTTCCGCCCACCGCTTTGTAGTGTTTCGGGCTCCATCCTTCCAGGTGTCAGGAGTGATGACACGCCCGAGTTTCTTCTCACACTTCTCACAAACCATCGTTTCACCcaccacagaaaaacaagaaaataaaaataagctacAAACGgaaaaggcaacaaaataaataaaacatctacgAAGTCTTATGACAACACTTCCTGTATTCGTATTTCCGTTTCCGAAACTAGAAGGGGTGTGATAGAAAGAAACTGCGCCTTTGTGTCCGCCATTTTGGATCAACCCTTCGCGGTGTTCGTATTGGTTTAATGGCGGATATACGCTCCAATGCAGACCGGAAATGACAGCAGTTTCATGGTTCTGATTCCGATGCTCTTCACCCCGCC

Function

symbol description
cript Predicted to enable PDZ domain binding activity and microtubule binding activity. Predicted to be involved in cytoplasmic microtubule organization. Predicted to be located in cytoplasm. Predicted to be active in dendrite. Orthologous to human CRIPT (CXXC repeat containing interactor of PDZ3 domain).

NR:

description
PREDICTED: cysteine-rich PDZ-binding protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202874 True 1183 lncRNA 0.44 5 18899147 18901718

Neighbor

gene id symbol gene type direction distance location
AMCG00001893 pigf,LOC107550047,LOC107698824,LOC107749355 coding downstream 148 18888451 ~ 18898999 (-)
AMCG00001887 NA coding downstream 179172 18706123 ~ 18719975 (-)
AMCG00001879 NA coding downstream 235757 18661002 ~ 18663390 (-)
AMCG00001878 six2a,six2,LOC107666385,LOC107602488,LOC107711421,LOC107602487,LOC107585295,LOC107733704 coding downstream 322583 18572048 ~ 18576564 (-)
AMCG00001876 NA coding downstream 535890 18358033 ~ 18363257 (-)
AMCG00001892 LOC108429343,LOC106589406 coding upstream 3477 18905195 ~ 18910940 (-)
AMCG00001891 mcfd2 coding upstream 73313 18975031 ~ 18979293 (-)
AMCG00001902 NA coding upstream 138735 19040453 ~ 19042847 (-)
AMCG00001903 LOC107670363 coding upstream 148584 19050302 ~ 19052311 (-)
AMCG00001904 NA coding upstream 152012 19053730 ~ 19054245 (-)
G161161 NA non-coding downstream 11579 18886294 ~ 18887568 (-)
G161030 NA non-coding downstream 553125 18262244 ~ 18346022 (-)
G161039 NA non-coding downstream 595049 18301084 ~ 18304098 (-)
G160944 NA non-coding downstream 859773 18038704 ~ 18039374 (-)
G160928 NA non-coding downstream 983456 17915418 ~ 17915691 (-)
G161206 NA non-coding upstream 182394 19084112 ~ 19084976 (-)
G161302 NA non-coding upstream 553406 19455124 ~ 19457742 (-)
G161346 LOC107739892 non-coding upstream 1190395 20092113 ~ 20093345 (-)
G161391 NA non-coding upstream 1323939 20225657 ~ 20225919 (-)
G161475 NA non-coding upstream 1536750 20438468 ~ 20438673 (-)
G161153 NA other downstream 48263 18835782 ~ 18850884 (-)
G160925 mta3,LOC105904126,LOC106516625,LOC107749351 other downstream 988294 17908754 ~ 17910853 (-)
AMCG00001863 LOC105006094,LOC104951035,LOC101160874,LOC106578938 other downstream 1033768 17860139 ~ 17865379 (-)
AMCG00001865 NA other downstream 1089050 17808018 ~ 17810097 (-)
G160817 NA other downstream 1367157 17530866 ~ 17531990 (-)
AMCG00001945 NA other upstream 1438707 20340425 ~ 20347505 (-)

Expression


Co-expression Network