G161206


Basic Information

Item Value
gene id G161206
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 19084112 ~ 19084976 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU202931
CACGGGCTTATCCCCCCCGAGAAACCCGCGTACAGGCCCGCGTCGCTCCGCTCGGGTCACCGCACAGCCACACGACGCCGGGGTTACTGTGTATCCATTACCGCAGCTGAAAGTGCGCCGAGCCCCGCACTCACCTTGCGCGCCGGATCCGGCAAGAGCCACGGCGAGCAACAGCAGGACAGACTTCATGGTTTGAAGGAAACGCCGACGAGCCGCACAGAGATGAACCCGCAGCCGCTCCGCACAGGTGCGCCGCCCTCCCGTCCGACCGGTCCGACCAGGTGAGCAGAGGCTCGGGTTACAGCAGCGGACCAGCCGTCAAGCGCCCACAAAGACACGGTCCTGCGCGCTCGCACAGAGGAAGACTGCGGCTTGTGTTGAAAAgggtcgtcgtcgtcttcttcttcttcgtcttcttcttcttcttcttcttcttcttcttccaagGACAAGGGCTGTTTCTAGTCCGTCTTCCGGCTCGTCTCCTCAGTCTTTTCTCCTCCGCTTCCTCCTCTGGTTATTATATACACCTGCCTCTGTGACGTCAGCCACTGTCTCACTGAAACCGGGGGCGTGGCCAGGTGTATCGTGACCTCACCGGCTCACCtgtccccccctccctcccacaccATATTAGGATGTTCCTCAGAAACatcaaaagaaaccaaaaaacaacaaaacggCTGGTTGCCAAACTGCAGGTGATGCACCAACTGACTCAGCTGGGAAATGGTTTGTTGTAGAAGATTCGGTGAGGATCAACGTTTCGATTCACAATAAACactgaataacaacaacagaactCAAGGCGGCTGGACAGTGGGAGGCCGCC

Function

GO:

id name namespace
GO:0004055 argininosuccinate synthase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202931 True 832 lncRNA 0.57 2 19084112 19084976

Neighbor

gene id symbol gene type direction distance location
AMCG00001901 NA coding downstream 5955 19064520 ~ 19078157 (-)
AMCG00001905 NA coding downstream 29140 19054745 ~ 19054972 (-)
AMCG00001906 NA coding downstream 29487 19054329 ~ 19054625 (-)
AMCG00001904 NA coding downstream 29867 19053730 ~ 19054245 (-)
AMCG00001903 LOC107670363 coding downstream 31801 19050302 ~ 19052311 (-)
AMCG00001911 kcnk12,LOC107589351,LOC107679129 coding upstream 29787 19114763 ~ 19115644 (-)
AMCG00001912 kcnk12,LOC106515821 coding upstream 42286 19127262 ~ 19131079 (-)
AMCG00001910 fbxo11,LOC107550041,LOC107749363,LOC108430631,LOC108413220,LOC107728720 coding upstream 92289 19177265 ~ 19186120 (-)
AMCG00001914 NA coding upstream 202302 19287278 ~ 19299869 (-)
AMCG00001913 NA coding upstream 226062 19311038 ~ 19323661 (-)
G161165 cript,LOC107582781,LOC107728714 non-coding downstream 182394 18899147 ~ 18901718 (-)
G161161 NA non-coding downstream 196544 18886294 ~ 18887568 (-)
G161030 NA non-coding downstream 738090 18262244 ~ 18346022 (-)
G161039 NA non-coding downstream 780014 18301084 ~ 18304098 (-)
G160944 NA non-coding downstream 1044738 18038704 ~ 18039374 (-)
G161302 NA non-coding upstream 370148 19455124 ~ 19457742 (-)
G161346 LOC107739892 non-coding upstream 1007137 20092113 ~ 20093345 (-)
G161391 NA non-coding upstream 1140681 20225657 ~ 20225919 (-)
G161475 NA non-coding upstream 1353492 20438468 ~ 20438673 (-)
G161471 if3ei,eif3l,LOC106576896 non-coding upstream 1390952 20475928 ~ 20478231 (-)
G161153 NA other downstream 233228 18835782 ~ 18850884 (-)
G160925 mta3,LOC105904126,LOC106516625,LOC107749351 other downstream 1173259 17908754 ~ 17910853 (-)
AMCG00001863 LOC105006094,LOC104951035,LOC101160874,LOC106578938 other downstream 1218733 17860139 ~ 17865379 (-)
AMCG00001865 NA other downstream 1274015 17808018 ~ 17810097 (-)
G160817 NA other downstream 1552122 17530866 ~ 17531990 (-)
AMCG00001945 NA other upstream 1255449 20340425 ~ 20347505 (-)

Expression


Co-expression Network