G161302


Basic Information

Item Value
gene id G161302
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 19455124 ~ 19457742 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU203051
atgaatcaatgaaaTATTTACCTAAGTGAACTTAAGTTGATATTGAAGTTATTCGAGGGATGTGTAACTTCAACACTACAGTTCTGCGGAGAAGAGAGATTTTTCTTCATTAGgagatatttttatttccctttatttcactctgcattgaaatgttttttattaatttatatatttttagtcgTCTCTATGTCCTCTGAAGCAAAATGGTTGAAAGCCGTACGTGTCGAAGGAAAAGCTTTATTTTGACGTTTGTCATCTATtgatttttgtgatttttcccttttattttgtgttcatctttttgatttgtttgagcTTTTCGCCAGCAGATttatcttcaaaataaaatgttatgtcaCAGAGAAAAGTGGACATATGGACTTGGCAATCTATCCTTTTATCTGTTTCAAGTTATTTTGGGGTGATTTTTCTCAGCAATAAGCCCTGTTGTAATGTTCTGTCTCGGAGAACACAAAGGGAATGCATTAGGCTTGGATCGGAGCCCGGCTGAATCGCTGCAATGCCCCCTGGGAGAAATAGAGATGTTCACACTGTACAGACAGGAAGGAGGAATTTCAAATAAGCCGGAGTGGACGGAGCCACCAGATCCGTGTGCAGCTGCTGGGTTTCGGGAGACAGACGGCCTGTTCTCGGCAGTGTGTGCCTGTGGttgcctgcgtgtgtgtgtgtgtgtgcgcgtgttcGTGTGCGTGCGCGTGCGCGTCAGTGGTTTCAAATGGACCTGTGATGGCGGATGAGCTTTCTTATGCAGCTAAATGTTCCTTAAACCAAAAAACCTGCCTCATTTCCAGAATGAGCCGCAGTCTTCATTGCTGAATAATCTGCACCTGAAATTAACTTGAAGAGCTGTTTGATAGAGAATTGGGAATATCTCACAGccgttattatttttttccccaagtgtCAGGCTTTATCAGCGCATTGACATGAAACTCAAGGGAAATGGACATCAGATATCAAGGGTTTATCAAAACACAGTTTGACCAGACATTAGGATTTCCAGGAGATATTTCGCTCCATTAAAGAGTGAGAGTAAAAACTAAGGTTTCCTTCACGCTGTCATACGTTCAAACAAGATGGCAGTAAAACAATCAAGTAATTGAATTTTCCTCATAACTTAATTACAAAGAATCAgtacattactactactacagctattactactaataataattatacaataacTGAAATACCTGAGGTCTCGACACCGTGATACTCAGTCACAACATGAGGCTGCGATGTCCTAAAGAACCCAAACCAAGCCAGCAAGGACAGACGATAGTCTTTTAAAAGAGCAGCGTCTCCTGTGAGATGTCAAAGAAGCAAACTAGGAACTAGTTAGGAAACAAACAACACCAGACAGTGAGGACAGCATCACAAGGACAGAAACGCCAGGTATCTGGACATGGTGCCATGAACATTTGGACAATGACCTTCCAATGCTCGAGCTGACAGATAACATGGCATCAACATCTGAATAGTTTATAGCACCTGTAAGCGGAGTCTATTTACTCGACTCCTGCAGAACCACAGAGACATGCGAAGCCAGTCTGAGCCCTagatgtgtttgtctgtttggaTCACAACAGGTTCTGTCTGAAACCTAGACAATGCTGTGTCACTCTATGAAGTGACCCTCTGTTAGCCATGGGTGACACGAGGCTGACAatgattgtgaaatgtatttatttaattcctgagactaaaaacatataaacagtCCAGCTGATGAATAGGAGGAAGAAGATTGCCAGGTTTCTAGGGTCCATCCATTAAAAAATGCCTCCCTGTAATTAAACagtacttaataataataacaataagataTGTAAAGTCAAAACGATtactatttaattttacaaaaagcagaaatgtaagAAATTGGTGGCCAGCGCAGGCAGGGCACAGTGTCTGATGTGTCTGTGGTCACGGCTCTTGCGTGTAGTGCTCTGGTAGCATGTGAGACTCGTGTGGAGCTGCAGAACAGCAAACATACAGTGATGTCTCTCCAGACTTTCATGGAACCAAAACAGAAagagatataaataaatatatattaataaaattgttcACGAGTTGAGATTAAAACTGCTACAAACATTCCATTCCTCAGCCCGGTTCTCGCTCCTCTGTTGGACCGGCACCGACCGCACTCTCTGAGCGACCCGCGTGGAACCACGTGGAAACCACTCACGCACTCGGGGAAACGCAGTTGGGTTCGGTGGAGGCGGCTGAGTCAGTATTACAGTTGCGGTGCTGTATGGTACTCATTGTACCTTTATTCGGCTCATTGCTTTGCCAGCCAACATGCTCTTCAATGTGCGGCCCTGGCACCATTCCTCCTTCCTGTCTCCTGGTGCCGGCGGGTGGCATCGGCAGATTTTGGGACCTGTCCCATTCTGTGATTTCAAACCACTGAAGACATTTAAACTCCCAGCATGGCCTTCACAGGTCTAACCCCCTGACCCATTCGGTGCTTTGtgtaataattacatacaaaatatgttcACTGATTACCAAAAtgttattcttttttgtttctgtttttctatttttgttgcAAGGCCGTTTTTATCCATTGTTGGAAATGCTACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203051 True 2619 lncRNA 0.42 1 19455124 19457742

Neighbor

gene id symbol gene type direction distance location
AMCG00001913 NA coding downstream 131463 19311038 ~ 19323661 (-)
AMCG00001914 NA coding downstream 155255 19287278 ~ 19299869 (-)
AMCG00001910 fbxo11,LOC107550041,LOC107749363,LOC108430631,LOC108413220,LOC107728720 coding downstream 269004 19177265 ~ 19186120 (-)
AMCG00001912 kcnk12,LOC106515821 coding downstream 324045 19127262 ~ 19131079 (-)
AMCG00001911 kcnk12,LOC107589351,LOC107679129 coding downstream 339480 19114763 ~ 19115644 (-)
AMCG00001916 LOC104952680,LOC108443646 coding upstream 1538 19459280 ~ 19460843 (-)
AMCG00001917 NA coding upstream 50255 19507997 ~ 19511624 (-)
AMCG00001918 NA coding upstream 57839 19515581 ~ 19519632 (-)
AMCG00001919 NA coding upstream 114457 19572199 ~ 19573651 (-)
AMCG00001927 NA coding upstream 163644 19621386 ~ 19634914 (-)
G161206 NA non-coding downstream 370148 19084112 ~ 19084976 (-)
G161165 cript,LOC107582781,LOC107728714 non-coding downstream 553406 18899147 ~ 18901718 (-)
G161161 NA non-coding downstream 567556 18886294 ~ 18887568 (-)
G161030 NA non-coding downstream 1109102 18262244 ~ 18346022 (-)
G161039 NA non-coding downstream 1151026 18301084 ~ 18304098 (-)
G161346 LOC107739892 non-coding upstream 634371 20092113 ~ 20093345 (-)
G161391 NA non-coding upstream 767915 20225657 ~ 20225919 (-)
G161475 NA non-coding upstream 980726 20438468 ~ 20438673 (-)
G161471 if3ei,eif3l,LOC106576896 non-coding upstream 1018186 20475928 ~ 20478231 (-)
G161480 NA non-coding upstream 1020566 20478308 ~ 20478719 (-)
G161153 NA other downstream 604240 18835782 ~ 18850884 (-)
G160925 mta3,LOC105904126,LOC106516625,LOC107749351 other downstream 1544271 17908754 ~ 17910853 (-)
AMCG00001863 LOC105006094,LOC104951035,LOC101160874,LOC106578938 other downstream 1589745 17860139 ~ 17865379 (-)
AMCG00001865 NA other downstream 1645027 17808018 ~ 17810097 (-)
G160817 NA other downstream 1923134 17530866 ~ 17531990 (-)
AMCG00001945 NA other upstream 882683 20340425 ~ 20347505 (-)

Expression


Co-expression Network